miRNA display CGI


Results 21 - 40 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 3' -63.4 NC_002794.1 + 193159 1.11 0.000567
Target:  5'- gCGCCUCCAGCAGCACCAGCCCGCGCCg -3'
miRNA:   3'- -GCGGAGGUCGUCGUGGUCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 193050 0.66 0.627699
Target:  5'- uCGCa--CAGCGcccGCACCGGCUgCGgGCCg -3'
miRNA:   3'- -GCGgagGUCGU---CGUGGUCGG-GCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 192999 0.68 0.523264
Target:  5'- uCGCCcggcgUguGCAGCGCCAGCggcguguacauCUGCuGCCg -3'
miRNA:   3'- -GCGGa----GguCGUCGUGGUCG-----------GGCG-CGG- -5'
10700 3' -63.4 NC_002794.1 + 192697 0.67 0.551268
Target:  5'- aCGUCUUCAGCAGC-CC-GCaCCGaaagaacauCGCCa -3'
miRNA:   3'- -GCGGAGGUCGUCGuGGuCG-GGC---------GCGG- -5'
10700 3' -63.4 NC_002794.1 + 192639 0.75 0.213601
Target:  5'- gGCCgcUCCAGCcGCGCC-GCCgCGCGCUc -3'
miRNA:   3'- gCGG--AGGUCGuCGUGGuCGG-GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 192452 0.71 0.362658
Target:  5'- gCGCCUCgCAGUcgcGCGCCA-CCaGCGCCg -3'
miRNA:   3'- -GCGGAG-GUCGu--CGUGGUcGGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 192359 0.69 0.451626
Target:  5'- gGCCUCCGccGCcgccgaccgAGCGCgGGCugaccgccaccgCCGCGCCg -3'
miRNA:   3'- gCGGAGGU--CG---------UCGUGgUCG------------GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 191644 0.77 0.146194
Target:  5'- uCGCCgUCCAGCAGCccGCCGGgggaCgGCGCCg -3'
miRNA:   3'- -GCGG-AGGUCGUCG--UGGUCg---GgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 191502 0.76 0.160965
Target:  5'- cCGCCaccgagaggugCCAGCgccgGGCGUCGGCCCGCGCCu -3'
miRNA:   3'- -GCGGa----------GGUCG----UCGUGGUCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 190951 0.76 0.177067
Target:  5'- gGCC-CCAGCAGCACCAGCgCCucgGgGCa -3'
miRNA:   3'- gCGGaGGUCGUCGUGGUCG-GG---CgCGg -5'
10700 3' -63.4 NC_002794.1 + 190852 0.66 0.656577
Target:  5'- aCGaUCUCCAGCGGgucguacacguaCAcCCGGCugCCGUGCCc -3'
miRNA:   3'- -GC-GGAGGUCGUC------------GU-GGUCG--GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 190749 0.68 0.504902
Target:  5'- cCGUCUCgaCGGgGGCGgCGGCCgCGCGUCc -3'
miRNA:   3'- -GCGGAG--GUCgUCGUgGUCGG-GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 190536 0.66 0.637331
Target:  5'- uCGUCguccaCCAGCGGU-CCGcGUCCGuCGCCg -3'
miRNA:   3'- -GCGGa----GGUCGUCGuGGU-CGGGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 190493 0.69 0.443045
Target:  5'- aCGCCgcCCAGgagauaccaCGGCGugcCCAGCCgCGUGCCg -3'
miRNA:   3'- -GCGGa-GGUC---------GUCGU---GGUCGG-GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 190263 0.7 0.385691
Target:  5'- cCGCUUCCAGUcgcacGCGCCgguagaAGUCCGUGUCg -3'
miRNA:   3'- -GCGGAGGUCGu----CGUGG------UCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 190199 0.7 0.401575
Target:  5'- aCGCgCUCCAGCGccgcgcGCACCcGCCgGgCGCUc -3'
miRNA:   3'- -GCG-GAGGUCGU------CGUGGuCGGgC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 189897 0.69 0.477898
Target:  5'- gGCCcgCCGuCAGCGCC-GCCgCGCGaCCg -3'
miRNA:   3'- gCGGa-GGUcGUCGUGGuCGG-GCGC-GG- -5'
10700 3' -63.4 NC_002794.1 + 189537 0.69 0.437093
Target:  5'- cCGCUcCCAGUcgauccaccacauGGCggucccgcucggucgGCCGGCCCGgGCCg -3'
miRNA:   3'- -GCGGaGGUCG-------------UCG---------------UGGUCGGGCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 188974 0.71 0.370229
Target:  5'- aCGCCgcCCAGCucGGcCACCAGCCaGCGgCa -3'
miRNA:   3'- -GCGGa-GGUCG--UC-GUGGUCGGgCGCgG- -5'
10700 3' -63.4 NC_002794.1 + 188890 0.68 0.504902
Target:  5'- gGCCagCAGUGGCggGCCAGCUCGgucaGCCc -3'
miRNA:   3'- gCGGagGUCGUCG--UGGUCGGGCg---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.