miRNA display CGI


Results 61 - 80 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 3' -63.4 NC_002794.1 + 185171 0.66 0.66042
Target:  5'- cCGCCggCgCGGCgcggucggcgcggucGGCGCggucaucgCGGCUCGCGCCg -3'
miRNA:   3'- -GCGGa-G-GUCG---------------UCGUG--------GUCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 185061 0.7 0.409671
Target:  5'- gGUCUgCAGCcGC-CgCGGCCCGuCGCCg -3'
miRNA:   3'- gCGGAgGUCGuCGuG-GUCGGGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 184971 0.69 0.443045
Target:  5'- cCGCUcgUCgGGCAGCACgCAGCgCGCGa- -3'
miRNA:   3'- -GCGG--AGgUCGUCGUG-GUCGgGCGCgg -5'
10700 3' -63.4 NC_002794.1 + 184945 0.83 0.058225
Target:  5'- uGCCg-CAGCuGCGCCGGCCCGCGCa -3'
miRNA:   3'- gCGGagGUCGuCGUGGUCGGGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 184750 0.73 0.262245
Target:  5'- gCGCCggUCCAGCguuccacggucAGCGCCGGCUCGCucGUCg -3'
miRNA:   3'- -GCGG--AGGUCG-----------UCGUGGUCGGGCG--CGG- -5'
10700 3' -63.4 NC_002794.1 + 184619 0.67 0.597887
Target:  5'- gGCCagCGGCAGCguccacgAUCGGCgUCGCGUCg -3'
miRNA:   3'- gCGGagGUCGUCG-------UGGUCG-GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 184563 0.76 0.181311
Target:  5'- aCGCCUCacgcgccgccgCGGCGGCGgCGGCCaCGCGCg -3'
miRNA:   3'- -GCGGAG-----------GUCGUCGUgGUCGG-GCGCGg -5'
10700 3' -63.4 NC_002794.1 + 184500 0.77 0.153419
Target:  5'- aCGCC-CgGGCGGCGCgGGcCCCGCGCg -3'
miRNA:   3'- -GCGGaGgUCGUCGUGgUC-GGGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 184170 0.73 0.268173
Target:  5'- gCGUCUCCAcccgacaccGCGGCGCCcggcgaGGCCCGCucccGCCc -3'
miRNA:   3'- -GCGGAGGU---------CGUCGUGG------UCGGGCG----CGG- -5'
10700 3' -63.4 NC_002794.1 + 184020 0.67 0.560706
Target:  5'- uCGCCggccgCCAcggcaccgcgcGCAGCGCgCGGUCgCGgGCCg -3'
miRNA:   3'- -GCGGa----GGU-----------CGUCGUG-GUCGG-GCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 183771 0.68 0.532542
Target:  5'- aCGUCgucgaCAGCAGCAucUCGGCCCcCGUCa -3'
miRNA:   3'- -GCGGag---GUCGUCGU--GGUCGGGcGCGG- -5'
10700 3' -63.4 NC_002794.1 + 183697 0.72 0.319524
Target:  5'- cCGCCgcgCgCGGCGGCACagccacaccguCAGCCCgcacGCGCCc -3'
miRNA:   3'- -GCGGa--G-GUCGUCGUG-----------GUCGGG----CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 183654 0.69 0.443045
Target:  5'- cCGCCUUCucc-GCGCCgGGCCCgaGCGCCg -3'
miRNA:   3'- -GCGGAGGucguCGUGG-UCGGG--CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 183610 0.7 0.417868
Target:  5'- gGCCgcgCgCGGcCGGCGCC--CCCGCGCCc -3'
miRNA:   3'- gCGGa--G-GUC-GUCGUGGucGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 183452 0.7 0.377907
Target:  5'- cCGCCaCCGcCGGCGCCcGCCCGcCGCg -3'
miRNA:   3'- -GCGGaGGUcGUCGUGGuCGGGC-GCGg -5'
10700 3' -63.4 NC_002794.1 + 183200 0.68 0.486822
Target:  5'- cCGCCacgCCGGCGGCGC--GUUCGuCGCCa -3'
miRNA:   3'- -GCGGa--GGUCGUCGUGguCGGGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 182986 0.69 0.477898
Target:  5'- aGCCgacggCCGGCgcuucgccgcgGGCGCCccGCgCGCGCCc -3'
miRNA:   3'- gCGGa----GGUCG-----------UCGUGGu-CGgGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 182528 0.66 0.61807
Target:  5'- cCGuCCaCCAGC-GCGgCAGCgaCUGCGCCg -3'
miRNA:   3'- -GC-GGaGGUCGuCGUgGUCG--GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 182196 0.71 0.355195
Target:  5'- gGCCUC----GGCGCCGGCgUCGCGCCa -3'
miRNA:   3'- gCGGAGgucgUCGUGGUCG-GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 182090 0.7 0.409671
Target:  5'- cCGCCagCCAGCguucuucgcgguAGCggauccggcGCCAGCcgaaCCGCGCCa -3'
miRNA:   3'- -GCGGa-GGUCG------------UCG---------UGGUCG----GGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.