miRNA display CGI


Results 81 - 100 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 3' -63.4 NC_002794.1 + 181741 0.73 0.262245
Target:  5'- aCGCg-CgAGCGGCcgGCCAGCCCGCugacGCCg -3'
miRNA:   3'- -GCGgaGgUCGUCG--UGGUCGGGCG----CGG- -5'
10700 3' -63.4 NC_002794.1 + 181536 0.69 0.434557
Target:  5'- cCGCCgCCGGCGG-GCCGGCgcucucggucgCCGgGCCa -3'
miRNA:   3'- -GCGGaGGUCGUCgUGGUCG-----------GGCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 181247 0.67 0.588307
Target:  5'- gCGCCuUCCA-CcGCGCguGCCCGCgaacgaaGCCg -3'
miRNA:   3'- -GCGG-AGGUcGuCGUGguCGGGCG-------CGG- -5'
10700 3' -63.4 NC_002794.1 + 181151 0.7 0.377907
Target:  5'- cCGCCUCCAGCccguCCG--CCGCGCCg -3'
miRNA:   3'- -GCGGAGGUCGucguGGUcgGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 180861 0.66 0.637331
Target:  5'- gGCCUCgucggaGGCGGCGgauCCGGCgCGC-CCg -3'
miRNA:   3'- gCGGAGg-----UCGUCGU---GGUCGgGCGcGG- -5'
10700 3' -63.4 NC_002794.1 + 180617 0.68 0.504902
Target:  5'- gGCCacgacaCGGCGGC-CCA-CCCGCGCUc -3'
miRNA:   3'- gCGGag----GUCGUCGuGGUcGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 180577 0.66 0.646959
Target:  5'- gGCCcaguugUCCcacGGCAGCAgCuGuCCuCGCGCCg -3'
miRNA:   3'- gCGG------AGG---UCGUCGUgGuC-GG-GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 180293 0.68 0.523264
Target:  5'- gCGCCgCC-GCAacaCGCCGGCCgGCGCg -3'
miRNA:   3'- -GCGGaGGuCGUc--GUGGUCGGgCGCGg -5'
10700 3' -63.4 NC_002794.1 + 179201 0.67 0.583528
Target:  5'- aCGCCccggCCGGCGGCACgacggacgUGGCCCagaugcaacaggucgGCGUCg -3'
miRNA:   3'- -GCGGa---GGUCGUCGUG--------GUCGGG---------------CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 156986 0.68 0.51405
Target:  5'- uGCCUCUAuGUaaGGUccuaGCgGGCCCGCgGCCa -3'
miRNA:   3'- gCGGAGGU-CG--UCG----UGgUCGGGCG-CGG- -5'
10700 3' -63.4 NC_002794.1 + 156408 0.67 0.55787
Target:  5'- gCGCCgcggCC-GCGGCcacgGCCGGCgggugagagaccggUCGCGCCg -3'
miRNA:   3'- -GCGGa---GGuCGUCG----UGGUCG--------------GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 156203 0.66 0.656577
Target:  5'- uCGCCggucggagggCCGGCGacucCGCCGGCggcuCCGCGCUc -3'
miRNA:   3'- -GCGGa---------GGUCGUc---GUGGUCG----GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 154409 0.67 0.541878
Target:  5'- uGCCgguggCCAGCGcucGCAUccgaCAGgUCGCGCCg -3'
miRNA:   3'- gCGGa----GGUCGU---CGUG----GUCgGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 154311 0.67 0.55976
Target:  5'- aGCCUCCucgggagAGCGGCGUCGGUcgucccgggugCCGCgGCCg -3'
miRNA:   3'- gCGGAGG-------UCGUCGUGGUCG-----------GGCG-CGG- -5'
10700 3' -63.4 NC_002794.1 + 152591 0.7 0.426164
Target:  5'- cCGCCacgUCCcuGCGGCGCgGGCCCaagcgGCGCa -3'
miRNA:   3'- -GCGG---AGGu-CGUCGUGgUCGGG-----CGCGg -5'
10700 3' -63.4 NC_002794.1 + 151963 0.66 0.645996
Target:  5'- gGCC-CCGGguGCuccUCGGCCCGggacguggucuacCGCCc -3'
miRNA:   3'- gCGGaGGUCguCGu--GGUCGGGC-------------GCGG- -5'
10700 3' -63.4 NC_002794.1 + 151697 0.68 0.523264
Target:  5'- uCGCCccgCCGGCcgagcGCGCCAG-UCGCGCg -3'
miRNA:   3'- -GCGGa--GGUCGu----CGUGGUCgGGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 151643 0.73 0.286608
Target:  5'- uCGCCgCCGGcCGGCACuUGGCUCGcCGCCg -3'
miRNA:   3'- -GCGGaGGUC-GUCGUG-GUCGGGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 151576 0.7 0.392787
Target:  5'- gCGCCccCCGGCGGCgcgcgccgccgccGCgGGCCCGCGg- -3'
miRNA:   3'- -GCGGa-GGUCGUCG-------------UGgUCGGGCGCgg -5'
10700 3' -63.4 NC_002794.1 + 150840 0.68 0.493116
Target:  5'- uCGUcagCUCCAGCGGCgGCCgcgucuacgccuauAGCCgGCGCa -3'
miRNA:   3'- -GCG---GAGGUCGUCG-UGG--------------UCGGgCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.