miRNA display CGI


Results 101 - 120 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 3' -63.4 NC_002794.1 + 150529 0.69 0.460297
Target:  5'- gGCC-CC-GUAGC-CgGGCCgGCGCCa -3'
miRNA:   3'- gCGGaGGuCGUCGuGgUCGGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 150243 0.67 0.541878
Target:  5'- aGCUggaAGC-GCugCGGCUCGUGCCg -3'
miRNA:   3'- gCGGaggUCGuCGugGUCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 149239 0.66 0.627699
Target:  5'- cCGCCgucgCCGgggucGCGGCGCCAccacccucGUCCcCGCCg -3'
miRNA:   3'- -GCGGa---GGU-----CGUCGUGGU--------CGGGcGCGG- -5'
10700 3' -63.4 NC_002794.1 + 148632 0.7 0.417868
Target:  5'- gGUCUCCgaucgcGGCGGCGugcUCGGCUaCGCGCCg -3'
miRNA:   3'- gCGGAGG------UCGUCGU---GGUCGG-GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 148226 0.67 0.570189
Target:  5'- gGUCUCCGGuCGGCGUCA-CCaCGCGCUg -3'
miRNA:   3'- gCGGAGGUC-GUCGUGGUcGG-GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 148198 0.71 0.370229
Target:  5'- gGUCUCC---GGCGCCGGCgCGCGCUc -3'
miRNA:   3'- gCGGAGGucgUCGUGGUCGgGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 146999 0.69 0.477898
Target:  5'- gGCCgacgUCGGCGGCGgCGGCCgccgGCGCUc -3'
miRNA:   3'- gCGGa---GGUCGUCGUgGUCGGg---CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 145812 0.69 0.434557
Target:  5'- aCGCCgccgCCGGCGGCG--AGCCgagCGCGUCg -3'
miRNA:   3'- -GCGGa---GGUCGUCGUggUCGG---GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 145546 0.67 0.570189
Target:  5'- gCGCC-CCgAGCGGCccgACCGGUUCGCGg- -3'
miRNA:   3'- -GCGGaGG-UCGUCG---UGGUCGGGCGCgg -5'
10700 3' -63.4 NC_002794.1 + 145323 0.67 0.598846
Target:  5'- gCGCggCgGGCGGCGCUcgGGCCCGagcggGCCc -3'
miRNA:   3'- -GCGgaGgUCGUCGUGG--UCGGGCg----CGG- -5'
10700 3' -63.4 NC_002794.1 + 145206 0.71 0.365673
Target:  5'- gGcCCUCCGGCAGCGCuCcuucguggugucggaGGCgCGCGCg -3'
miRNA:   3'- gC-GGAGGUCGUCGUG-G---------------UCGgGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 144913 0.7 0.385691
Target:  5'- gGCCccgCCGcCGGCACCAa-CCGCGCCa -3'
miRNA:   3'- gCGGa--GGUcGUCGUGGUcgGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 143847 0.69 0.451626
Target:  5'- aCGCCUCCGGCcaGGCgaucGCC-GCCgCgGCGUCa -3'
miRNA:   3'- -GCGGAGGUCG--UCG----UGGuCGG-G-CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 143718 0.68 0.504902
Target:  5'- gGCC-CCGGCGGgcgucguccuCGCCcGCCggaCGCGCCg -3'
miRNA:   3'- gCGGaGGUCGUC----------GUGGuCGG---GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 143533 0.71 0.354455
Target:  5'- cCGCgUCCAggaggcGCGGCAcgagcacgguggcCCAGCCgugCGCGCCg -3'
miRNA:   3'- -GCGgAGGU------CGUCGU-------------GGUCGG---GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 143248 0.67 0.541878
Target:  5'- uGUCgUCguGguGCAggaggaaggcCCGGCCCGgCGCCg -3'
miRNA:   3'- gCGG-AGguCguCGU----------GGUCGGGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 141559 0.66 0.621921
Target:  5'- cCGCCaCCcGCGGCcgcgGCCuccgugaucaugacGCCCGCGUCg -3'
miRNA:   3'- -GCGGaGGuCGUCG----UGGu-------------CGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 138436 0.69 0.469055
Target:  5'- aGCCgcgguggCGGCGGCGCCucGGCCUGCGaCg -3'
miRNA:   3'- gCGGag-----GUCGUCGUGG--UCGGGCGCgG- -5'
10700 3' -63.4 NC_002794.1 + 137704 0.69 0.477898
Target:  5'- gGCCUCCGGCuugaGCCGGCaacuuggaGCGUCa -3'
miRNA:   3'- gCGGAGGUCGucg-UGGUCGgg------CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 137639 0.68 0.504902
Target:  5'- aCGUC-CUGGCgGGCGCCgGGCCUccgGCGCCg -3'
miRNA:   3'- -GCGGaGGUCG-UCGUGG-UCGGG---CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.