miRNA display CGI


Results 121 - 140 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 3' -63.4 NC_002794.1 + 137479 0.69 0.466418
Target:  5'- gGCCUCguagAGCAGCGCCAcggucgguuccuccGCCgGCGUUu -3'
miRNA:   3'- gCGGAGg---UCGUCGUGGU--------------CGGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 137410 0.68 0.532542
Target:  5'- gGCgUCC-GCGGaCGCCgcGGagaCCGCGCCg -3'
miRNA:   3'- gCGgAGGuCGUC-GUGG--UCg--GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 136699 0.68 0.51405
Target:  5'- -cCUUCCAGCgcccggugcaGGCGCCGGuCCCgGCGUCc -3'
miRNA:   3'- gcGGAGGUCG----------UCGUGGUC-GGG-CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 135700 0.69 0.450764
Target:  5'- gGUCUCCAgGUAGCGCUcgagcugcugcguAGCaucugcaccugCCGCGCCg -3'
miRNA:   3'- gCGGAGGU-CGUCGUGG-------------UCG-----------GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 135483 0.66 0.61807
Target:  5'- aCGCCgCCGucgacGC-GCGCgGGCCCGaUGCCc -3'
miRNA:   3'- -GCGGaGGU-----CGuCGUGgUCGGGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 134296 0.67 0.551268
Target:  5'- gCGCCUCUucgauCGGCugUgucGCCuCGCGCCg -3'
miRNA:   3'- -GCGGAGGuc---GUCGugGu--CGG-GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 133381 0.66 0.627699
Target:  5'- uCGUCgUCCGGCGGUcaugAUCGGCCCGgGg- -3'
miRNA:   3'- -GCGG-AGGUCGUCG----UGGUCGGGCgCgg -5'
10700 3' -63.4 NC_002794.1 + 131257 0.78 0.13267
Target:  5'- aCGCCgCCGGCaccaccgccGGCACCAccGCCgGCGCCg -3'
miRNA:   3'- -GCGGaGGUCG---------UCGUGGU--CGGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 131176 0.67 0.589264
Target:  5'- cCGUCUCgAGCcggagacagcacGGCGCCgGGgCgGCGCCg -3'
miRNA:   3'- -GCGGAGgUCG------------UCGUGG-UCgGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 131146 0.7 0.401575
Target:  5'- uGCCgaUCCGGUcGCacGCCAGCaCgGCGCCc -3'
miRNA:   3'- gCGG--AGGUCGuCG--UGGUCG-GgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 130629 0.73 0.262245
Target:  5'- gGUgUUCGGCGuCGCCGGCCCGCccGCCg -3'
miRNA:   3'- gCGgAGGUCGUcGUGGUCGGGCG--CGG- -5'
10700 3' -63.4 NC_002794.1 + 129242 0.66 0.627699
Target:  5'- gCGgCUCCGGCGGacuCgGGUCgaGCGCCu -3'
miRNA:   3'- -GCgGAGGUCGUCgu-GgUCGGg-CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 128454 0.67 0.597887
Target:  5'- gCGCCUCCGGagcccaggacgacCGGuCACCGGgUCGCGgaCCg -3'
miRNA:   3'- -GCGGAGGUC-------------GUC-GUGGUCgGGCGC--GG- -5'
10700 3' -63.4 NC_002794.1 + 127811 0.66 0.636367
Target:  5'- aCGCCg--AGCgAGCGCCcgucgucGGCCCGaGCCg -3'
miRNA:   3'- -GCGGaggUCG-UCGUGG-------UCGGGCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 127198 0.71 0.370229
Target:  5'- gGCCgcagCC-GCAGCAgCAGCCUcaaccccagcagGCGCCc -3'
miRNA:   3'- gCGGa---GGuCGUCGUgGUCGGG------------CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 126370 0.66 0.646959
Target:  5'- uCGCCg-CuGCgugGGCGCCggGGCCUGCGCg -3'
miRNA:   3'- -GCGGagGuCG---UCGUGG--UCGGGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 126269 0.67 0.541878
Target:  5'- gGCUggCUGGCGGCGCUGggcuugcugugcGCCgCGCGCCu -3'
miRNA:   3'- gCGGa-GGUCGUCGUGGU------------CGG-GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 126105 0.76 0.168844
Target:  5'- gGCUUCCGGCccugGGCGCCGcgcucGUCUGCGCCg -3'
miRNA:   3'- gCGGAGGUCG----UCGUGGU-----CGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 126070 0.67 0.551268
Target:  5'- gCGCCU--GGCcuGgACCGGCCUGCgGCCg -3'
miRNA:   3'- -GCGGAggUCGu-CgUGGUCGGGCG-CGG- -5'
10700 3' -63.4 NC_002794.1 + 125339 0.67 0.551268
Target:  5'- gCGCCa-CGGC-GCACCGGCagCCGCugGCCg -3'
miRNA:   3'- -GCGGagGUCGuCGUGGUCG--GGCG--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.