miRNA display CGI


Results 41 - 60 of 490 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 3' -63.4 NC_002794.1 + 48167 0.66 0.656577
Target:  5'- gCGCCgcUUCAcGCcGCugCAGCggaaCUGCGCCa -3'
miRNA:   3'- -GCGG--AGGU-CGuCGugGUCG----GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 61736 0.66 0.656577
Target:  5'- cCGCC-CC-GCGGa---AGCCCGCGCg -3'
miRNA:   3'- -GCGGaGGuCGUCguggUCGGGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 111742 0.66 0.656577
Target:  5'- gCGCUcgUCgAGCuGGCGCC-GCgCgGCGCCg -3'
miRNA:   3'- -GCGG--AGgUCG-UCGUGGuCG-GgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 190852 0.66 0.656577
Target:  5'- aCGaUCUCCAGCGGgucguacacguaCAcCCGGCugCCGUGCCc -3'
miRNA:   3'- -GC-GGAGGUCGUC------------GU-GGUCG--GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 156203 0.66 0.656577
Target:  5'- uCGCCggucggagggCCGGCGacucCGCCGGCggcuCCGCGCUc -3'
miRNA:   3'- -GCGGa---------GGUCGUc---GUGGUCG----GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 84977 0.66 0.646959
Target:  5'- gGCC-CCGGCcGCgaaaccccACgAGCCCGacCGCCg -3'
miRNA:   3'- gCGGaGGUCGuCG--------UGgUCGGGC--GCGG- -5'
10700 3' -63.4 NC_002794.1 + 79079 0.66 0.646959
Target:  5'- gCGCuCUCCccucGCGcuccCGCCcGCCCGCGCg -3'
miRNA:   3'- -GCG-GAGGu---CGUc---GUGGuCGGGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 92214 0.66 0.637331
Target:  5'- -aCCUUCGGCaAGCGCUAcGCCgGCgacGCCa -3'
miRNA:   3'- gcGGAGGUCG-UCGUGGU-CGGgCG---CGG- -5'
10700 3' -63.4 NC_002794.1 + 86092 0.66 0.637331
Target:  5'- cCGCCgCCGGgAcggauGCuCCGGCCCGaGCCc -3'
miRNA:   3'- -GCGGaGGUCgU-----CGuGGUCGGGCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 180861 0.66 0.637331
Target:  5'- gGCCUCgucggaGGCGGCGgauCCGGCgCGC-CCg -3'
miRNA:   3'- gCGGAGg-----UCGUCGU---GGUCGgGCGcGG- -5'
10700 3' -63.4 NC_002794.1 + 35790 0.66 0.645996
Target:  5'- uCGUCUCCGGCGugacccuGCGCCcccGGaCCCGguuuccgggcCGCCg -3'
miRNA:   3'- -GCGGAGGUCGU-------CGUGG---UC-GGGC----------GCGG- -5'
10700 3' -63.4 NC_002794.1 + 82482 0.66 0.637331
Target:  5'- gGCCUCCGcgacGCGGC-CC-GCCgcgaCGCGCg -3'
miRNA:   3'- gCGGAGGU----CGUCGuGGuCGG----GCGCGg -5'
10700 3' -63.4 NC_002794.1 + 190536 0.66 0.637331
Target:  5'- uCGUCguccaCCAGCGGU-CCGcGUCCGuCGCCg -3'
miRNA:   3'- -GCGGa----GGUCGUCGuGGU-CGGGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 81749 0.66 0.645996
Target:  5'- gCGUCUCCugcaucgcgcucaAGCAGCuCCGGCaCG-GCCg -3'
miRNA:   3'- -GCGGAGG-------------UCGUCGuGGUCGgGCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 42233 0.66 0.645996
Target:  5'- aGCCgcgagaCGGCGGCGacgaacuCCgAGCCCGCuCCg -3'
miRNA:   3'- gCGGag----GUCGUCGU-------GG-UCGGGCGcGG- -5'
10700 3' -63.4 NC_002794.1 + 151963 0.66 0.645996
Target:  5'- gGCC-CCGGguGCuccUCGGCCCGggacguggucuacCGCCc -3'
miRNA:   3'- gCGGaGGUCguCGu--GGUCGGGC-------------GCGG- -5'
10700 3' -63.4 NC_002794.1 + 67762 0.66 0.646959
Target:  5'- aCGgCUCgCGGCAaCGCCAGCUCGgacucgGCCg -3'
miRNA:   3'- -GCgGAG-GUCGUcGUGGUCGGGCg-----CGG- -5'
10700 3' -63.4 NC_002794.1 + 41806 0.66 0.646959
Target:  5'- aGCagacgUCCAGCgaGGCGCCcagcaGGCCCGUGgUCg -3'
miRNA:   3'- gCGg----AGGUCG--UCGUGG-----UCGGGCGC-GG- -5'
10700 3' -63.4 NC_002794.1 + 11644 0.66 0.646959
Target:  5'- aGCgaCgGGCGGCcgacgACgCGGCCCGCcgGCCa -3'
miRNA:   3'- gCGgaGgUCGUCG-----UG-GUCGGGCG--CGG- -5'
10700 3' -63.4 NC_002794.1 + 180577 0.66 0.646959
Target:  5'- gGCCcaguugUCCcacGGCAGCAgCuGuCCuCGCGCCg -3'
miRNA:   3'- gCGG------AGG---UCGUCGUgGuC-GG-GCGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.