miRNA display CGI


Results 101 - 120 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 3' -63.4 NC_002794.1 + 182528 0.66 0.61807
Target:  5'- cCGuCCaCCAGC-GCGgCAGCgaCUGCGCCg -3'
miRNA:   3'- -GC-GGaGGUCGuCGUgGUCG--GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 64572 0.66 0.619032
Target:  5'- cCGCCUCCAGCgacucGGCAcgguccacuucuucCCggaGGacgucuucgucccgaCCCGCGCCc -3'
miRNA:   3'- -GCGGAGGUCG-----UCGU--------------GG---UC---------------GGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 122036 0.66 0.624809
Target:  5'- gCGUCUCguGCAGCaucACCGcgagauggauuacuGCCUcgGCGCCc -3'
miRNA:   3'- -GCGGAGguCGUCG---UGGU--------------CGGG--CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 141559 0.66 0.621921
Target:  5'- cCGCCaCCcGCGGCcgcgGCCuccgugaucaugacGCCCGCGUCg -3'
miRNA:   3'- -GCGGaGGuCGUCG----UGGu-------------CGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 135483 0.66 0.61807
Target:  5'- aCGCCgCCGucgacGC-GCGCgGGCCCGaUGCCc -3'
miRNA:   3'- -GCGGaGGU-----CGuCGUGgUCGGGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 67343 0.66 0.627699
Target:  5'- uGCC-CCGGCGccGCcCCAcGCCgcacaGCGCCa -3'
miRNA:   3'- gCGGaGGUCGU--CGuGGU-CGGg----CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 193050 0.66 0.627699
Target:  5'- uCGCa--CAGCGcccGCACCGGCUgCGgGCCg -3'
miRNA:   3'- -GCGgagGUCGU---CGUGGUCGG-GCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 42946 0.66 0.637331
Target:  5'- uCGCCaugucgcCCAGCacGGCguggauguagGCCAGCUggUGCGCCa -3'
miRNA:   3'- -GCGGa------GGUCG--UCG----------UGGUCGG--GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 125297 0.66 0.637331
Target:  5'- -aCUUCCuGaCGGaagaGCCGuucGCCCGCGCCg -3'
miRNA:   3'- gcGGAGGuC-GUCg---UGGU---CGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 120183 0.66 0.637331
Target:  5'- gCGCCgCCAaGCgguucaagGGCACgAGCggggUCGCGCCg -3'
miRNA:   3'- -GCGGaGGU-CG--------UCGUGgUCG----GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 115370 0.66 0.637331
Target:  5'- gCGCgUCCAcccauuuccuGac-CGCCGGCCCGUGCUg -3'
miRNA:   3'- -GCGgAGGU----------CgucGUGGUCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 11368 0.66 0.637331
Target:  5'- aGCUUUCGGCAaaaGCCGGCCuCGacccaCGCCg -3'
miRNA:   3'- gCGGAGGUCGUcg-UGGUCGG-GC-----GCGG- -5'
10700 3' -63.4 NC_002794.1 + 71616 0.66 0.637331
Target:  5'- aGCCgcuugacCCGGUAGUACCAgGCCCcgaaGCUg -3'
miRNA:   3'- gCGGa------GGUCGUCGUGGU-CGGGcg--CGG- -5'
10700 3' -63.4 NC_002794.1 + 127811 0.66 0.636367
Target:  5'- aCGCCg--AGCgAGCGCCcgucgucGGCCCGaGCCg -3'
miRNA:   3'- -GCGGaggUCG-UCGUGG-------UCGGGCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 34398 0.66 0.637331
Target:  5'- aGCUUCUucucGCAGUACguGCCCGaCaCCg -3'
miRNA:   3'- gCGGAGGu---CGUCGUGguCGGGC-GcGG- -5'
10700 3' -63.4 NC_002794.1 + 63872 0.66 0.636367
Target:  5'- cCGUCUCCGucaacccGCuGCACCucuucucgccGGCCgucgcuCGCGCCg -3'
miRNA:   3'- -GCGGAGGU-------CGuCGUGG----------UCGG------GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 149239 0.66 0.627699
Target:  5'- cCGCCgucgCCGgggucGCGGCGCCAccacccucGUCCcCGCCg -3'
miRNA:   3'- -GCGGa---GGU-----CGUCGUGGU--------CGGGcGCGG- -5'
10700 3' -63.4 NC_002794.1 + 33629 0.66 0.636367
Target:  5'- uGCagaUCguGCGGCACC-GCCgcacgggCGCGCUg -3'
miRNA:   3'- gCGg--AGguCGUCGUGGuCGG-------GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 186011 0.66 0.627699
Target:  5'- cCGCCgcUCCGGgCccgGGC-CCGGaCCCGgGCCc -3'
miRNA:   3'- -GCGG--AGGUC-G---UCGuGGUC-GGGCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 185535 0.66 0.627699
Target:  5'- gCGCCUCaucucGCcacCCGGCCgCGCGCCc -3'
miRNA:   3'- -GCGGAGgucguCGu--GGUCGG-GCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.