miRNA display CGI


Results 21 - 40 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 3' -63.4 NC_002794.1 + 35790 0.66 0.645996
Target:  5'- uCGUCUCCGGCGugacccuGCGCCcccGGaCCCGguuuccgggcCGCCg -3'
miRNA:   3'- -GCGGAGGUCGU-------CGUGG---UC-GGGC----------GCGG- -5'
10700 3' -63.4 NC_002794.1 + 81749 0.66 0.645996
Target:  5'- gCGUCUCCugcaucgcgcucaAGCAGCuCCGGCaCG-GCCg -3'
miRNA:   3'- -GCGGAGG-------------UCGUCGuGGUCGgGCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 42233 0.66 0.645996
Target:  5'- aGCCgcgagaCGGCGGCGacgaacuCCgAGCCCGCuCCg -3'
miRNA:   3'- gCGGag----GUCGUCGU-------GG-UCGGGCGcGG- -5'
10700 3' -63.4 NC_002794.1 + 151963 0.66 0.645996
Target:  5'- gGCC-CCGGguGCuccUCGGCCCGggacguggucuacCGCCc -3'
miRNA:   3'- gCGGaGGUCguCGu--GGUCGGGC-------------GCGG- -5'
10700 3' -63.4 NC_002794.1 + 34398 0.66 0.637331
Target:  5'- aGCUUCUucucGCAGUACguGCCCGaCaCCg -3'
miRNA:   3'- gCGGAGGu---CGUCGUGguCGGGC-GcGG- -5'
10700 3' -63.4 NC_002794.1 + 71616 0.66 0.637331
Target:  5'- aGCCgcuugacCCGGUAGUACCAgGCCCcgaaGCUg -3'
miRNA:   3'- gCGGa------GGUCGUCGUGGU-CGGGcg--CGG- -5'
10700 3' -63.4 NC_002794.1 + 11368 0.66 0.637331
Target:  5'- aGCUUUCGGCAaaaGCCGGCCuCGacccaCGCCg -3'
miRNA:   3'- gCGGAGGUCGUcg-UGGUCGG-GC-----GCGG- -5'
10700 3' -63.4 NC_002794.1 + 115370 0.66 0.637331
Target:  5'- gCGCgUCCAcccauuuccuGac-CGCCGGCCCGUGCUg -3'
miRNA:   3'- -GCGgAGGU----------CgucGUGGUCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 120183 0.66 0.637331
Target:  5'- gCGCCgCCAaGCgguucaagGGCACgAGCggggUCGCGCCg -3'
miRNA:   3'- -GCGGaGGU-CG--------UCGUGgUCG----GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 125297 0.66 0.637331
Target:  5'- -aCUUCCuGaCGGaagaGCCGuucGCCCGCGCCg -3'
miRNA:   3'- gcGGAGGuC-GUCg---UGGU---CGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 42946 0.66 0.637331
Target:  5'- uCGCCaugucgcCCAGCacGGCguggauguagGCCAGCUggUGCGCCa -3'
miRNA:   3'- -GCGGa------GGUCG--UCG----------UGGUCGG--GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 62976 0.66 0.637331
Target:  5'- cCGCUUCCuGau-CACC-GCCgGCGCCu -3'
miRNA:   3'- -GCGGAGGuCgucGUGGuCGGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 190536 0.66 0.637331
Target:  5'- uCGUCguccaCCAGCGGU-CCGcGUCCGuCGCCg -3'
miRNA:   3'- -GCGGa----GGUCGUCGuGGU-CGGGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 82482 0.66 0.637331
Target:  5'- gGCCUCCGcgacGCGGC-CC-GCCgcgaCGCGCg -3'
miRNA:   3'- gCGGAGGU----CGUCGuGGuCGG----GCGCGg -5'
10700 3' -63.4 NC_002794.1 + 180861 0.66 0.637331
Target:  5'- gGCCUCgucggaGGCGGCGgauCCGGCgCGC-CCg -3'
miRNA:   3'- gCGGAGg-----UCGUCGU---GGUCGgGCGcGG- -5'
10700 3' -63.4 NC_002794.1 + 86092 0.66 0.637331
Target:  5'- cCGCCgCCGGgAcggauGCuCCGGCCCGaGCCc -3'
miRNA:   3'- -GCGGaGGUCgU-----CGuGGUCGGGCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 92214 0.66 0.637331
Target:  5'- -aCCUUCGGCaAGCGCUAcGCCgGCgacGCCa -3'
miRNA:   3'- gcGGAGGUCG-UCGUGGU-CGGgCG---CGG- -5'
10700 3' -63.4 NC_002794.1 + 78682 0.66 0.637331
Target:  5'- gGCCgCCGGCcGCAUgugCGGCCgacacgGCGCCg -3'
miRNA:   3'- gCGGaGGUCGuCGUG---GUCGGg-----CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 127811 0.66 0.636367
Target:  5'- aCGCCg--AGCgAGCGCCcgucgucGGCCCGaGCCg -3'
miRNA:   3'- -GCGGaggUCG-UCGUGG-------UCGGGCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 63872 0.66 0.636367
Target:  5'- cCGUCUCCGucaacccGCuGCACCucuucucgccGGCCgucgcuCGCGCCg -3'
miRNA:   3'- -GCGGAGGU-------CGuCGUGG----------UCGG------GCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.