miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 5' -59 NC_002794.1 + 36350 0.66 0.834302
Target:  5'- ---aCCcGG-CGUGCgcgGCCACCGGGUGc -3'
miRNA:   3'- cacaGGuCCaGCACG---CGGUGGUCCAU- -5'
10700 5' -59 NC_002794.1 + 3803 0.66 0.809295
Target:  5'- -gGUCCGGGUCG-GUGCCAaCCGc--- -3'
miRNA:   3'- caCAGGUCCAGCaCGCGGU-GGUccau -5'
10700 5' -59 NC_002794.1 + 139402 0.66 0.800643
Target:  5'- uUGaCCAGGUCGUGCGCgAagaagaugaugCAGGUc -3'
miRNA:   3'- cACaGGUCCAGCACGCGgUg----------GUCCAu -5'
10700 5' -59 NC_002794.1 + 99430 0.67 0.782913
Target:  5'- -gGUCCGGGUuuguuggacCGgaucCGCCGCCGGGg- -3'
miRNA:   3'- caCAGGUCCA---------GCac--GCGGUGGUCCau -5'
10700 5' -59 NC_002794.1 + 57998 0.67 0.77385
Target:  5'- -cG-CCAGGccuUCGU-CGCCGCCGGGg- -3'
miRNA:   3'- caCaGGUCC---AGCAcGCGGUGGUCCau -5'
10700 5' -59 NC_002794.1 + 182028 0.67 0.77385
Target:  5'- -cGUCCGGGcCGccgGCGaCCagACCAGGUc -3'
miRNA:   3'- caCAGGUCCaGCa--CGC-GG--UGGUCCAu -5'
10700 5' -59 NC_002794.1 + 158743 0.67 0.745973
Target:  5'- -gGcCCGGGUagUGUGCGCgCACguGGUGa -3'
miRNA:   3'- caCaGGUCCA--GCACGCG-GUGguCCAU- -5'
10700 5' -59 NC_002794.1 + 70630 0.67 0.73648
Target:  5'- -cGcCCcGGUCGcacCGCCACCAGGUu -3'
miRNA:   3'- caCaGGuCCAGCac-GCGGUGGUCCAu -5'
10700 5' -59 NC_002794.1 + 67205 0.68 0.707515
Target:  5'- -cGUCCGGG-CgGUGCGCUcggcGCCGGGc- -3'
miRNA:   3'- caCAGGUCCaG-CACGCGG----UGGUCCau -5'
10700 5' -59 NC_002794.1 + 67310 0.68 0.697727
Target:  5'- ---cCCAGGUCGggucGCGCCcguacaucGCCAGGg- -3'
miRNA:   3'- cacaGGUCCAGCa---CGCGG--------UGGUCCau -5'
10700 5' -59 NC_002794.1 + 53592 0.68 0.678003
Target:  5'- cGUGUCgGcGUCG-GCGUCACCGGGc- -3'
miRNA:   3'- -CACAGgUcCAGCaCGCGGUGGUCCau -5'
10700 5' -59 NC_002794.1 + 135091 0.69 0.668083
Target:  5'- --cUCCAGG-CGUGCGCUggaGCUAGGa- -3'
miRNA:   3'- cacAGGUCCaGCACGCGG---UGGUCCau -5'
10700 5' -59 NC_002794.1 + 146977 0.69 0.658136
Target:  5'- cUGUCgCgAGGUCG-GCGCCGCCGGc-- -3'
miRNA:   3'- cACAG-G-UCCAGCaCGCGGUGGUCcau -5'
10700 5' -59 NC_002794.1 + 21564 0.69 0.648168
Target:  5'- -aGUCCuccucGGGuucgUCGUGCGCgACCGGGg- -3'
miRNA:   3'- caCAGG-----UCC----AGCACGCGgUGGUCCau -5'
10700 5' -59 NC_002794.1 + 190650 0.7 0.618223
Target:  5'- cGUGUgCAGGaucaCGUcgcgcccgccGCGCCGCCGGGUc -3'
miRNA:   3'- -CACAgGUCCa---GCA----------CGCGGUGGUCCAu -5'
10700 5' -59 NC_002794.1 + 186227 0.7 0.588367
Target:  5'- -gGUCCGGGUCc--CGCCACCAGuGUc -3'
miRNA:   3'- caCAGGUCCAGcacGCGGUGGUC-CAu -5'
10700 5' -59 NC_002794.1 + 143021 0.7 0.578467
Target:  5'- cGUGcggucggCCGGGUCGacgUGCaggGCCGCCAGGUu -3'
miRNA:   3'- -CACa------GGUCCAGC---ACG---CGGUGGUCCAu -5'
10700 5' -59 NC_002794.1 + 69955 0.7 0.567619
Target:  5'- gGUGcCCGGGUUGUGCGUCACgcccagauacccgUGGGUGu -3'
miRNA:   3'- -CACaGGUCCAGCACGCGGUG-------------GUCCAU- -5'
10700 5' -59 NC_002794.1 + 195009 0.71 0.507664
Target:  5'- cUG-CCGGGcgaacuccucgaagUCGcGCGCCGCCAGGUGc -3'
miRNA:   3'- cACaGGUCC--------------AGCaCGCGGUGGUCCAU- -5'
10700 5' -59 NC_002794.1 + 188946 0.72 0.46406
Target:  5'- cUGUCCGGG-CGUGCGCagguUCAGGUc -3'
miRNA:   3'- cACAGGUCCaGCACGCGgu--GGUCCAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.