miRNA display CGI


Results 61 - 80 of 155 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10701 3' -53.9 NC_002794.1 + 89546 0.68 0.927944
Target:  5'- cAGA-CGCGACGGAGGAGcGUCGuGCcgaGCg -3'
miRNA:   3'- uUCUcGCGCUGCUUCUUC-UAGC-CG---CG- -5'
10701 3' -53.9 NC_002794.1 + 21913 0.68 0.927944
Target:  5'- uGGuG-GCGGCGGAGAcgacggcggcGGcgCGGCGCu -3'
miRNA:   3'- uUCuCgCGCUGCUUCU----------UCuaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 86820 0.68 0.942702
Target:  5'- cAGGGcCGCGACcucgccGGGAucGGGUCGGCGg -3'
miRNA:   3'- uUCUC-GCGCUGc-----UUCU--UCUAGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 89666 0.68 0.942702
Target:  5'- aAGGAaacGCGCGGCGGuGGGAGGgcuguucgCGGCGa -3'
miRNA:   3'- -UUCU---CGCGCUGCU-UCUUCUa-------GCCGCg -5'
10701 3' -53.9 NC_002794.1 + 110488 0.68 0.942702
Target:  5'- aGAGAGgcggugGCGGCGccugGAGAaagucggucgAGAUCGGCGUg -3'
miRNA:   3'- -UUCUCg-----CGCUGC----UUCU----------UCUAGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 48576 0.68 0.942702
Target:  5'- cAGAuGgGCGAgcCGGAGGAG--CGGCGCg -3'
miRNA:   3'- uUCU-CgCGCU--GCUUCUUCuaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 129208 0.68 0.938021
Target:  5'- -cGAGCGgcCGACGgcGGuGGAUaGGCGCg -3'
miRNA:   3'- uuCUCGC--GCUGCuuCU-UCUAgCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 134131 0.68 0.933102
Target:  5'- --cGGCGCGGCGAgcgcGGAAGcUCGGUcCg -3'
miRNA:   3'- uucUCGCGCUGCU----UCUUCuAGCCGcG- -5'
10701 3' -53.9 NC_002794.1 + 107131 0.68 0.938021
Target:  5'- -uGAcCGCGACG-GGAAcGAcgUCGGCGCc -3'
miRNA:   3'- uuCUcGCGCUGCuUCUU-CU--AGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 92272 0.69 0.898577
Target:  5'- --cGGCGCcgGGCGAGGcgcgcAAGGUCGGCGa -3'
miRNA:   3'- uucUCGCG--CUGCUUC-----UUCUAGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 180807 0.69 0.904299
Target:  5'- -uGAGCGaCGucucggacucuggGCGggGAGGAgccCGGCGUc -3'
miRNA:   3'- uuCUCGC-GC-------------UGCuuCUUCUa--GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 78328 0.69 0.904924
Target:  5'- --cGGCGCGACGGgcGGAGGcgccggaauGUCGGCcaGCa -3'
miRNA:   3'- uucUCGCGCUGCU--UCUUC---------UAGCCG--CG- -5'
10701 3' -53.9 NC_002794.1 + 149460 0.69 0.904924
Target:  5'- gAAGGGgGCGgucgaggaGCGAGGggGggCGGCa- -3'
miRNA:   3'- -UUCUCgCGC--------UGCUUCuuCuaGCCGcg -5'
10701 3' -53.9 NC_002794.1 + 128233 0.69 0.911035
Target:  5'- -cGAGCGCcguGACGGAGAcGGUCgucuGGuCGCg -3'
miRNA:   3'- uuCUCGCG---CUGCUUCUuCUAG----CC-GCG- -5'
10701 3' -53.9 NC_002794.1 + 102181 0.69 0.911035
Target:  5'- uGGcGCGCGGCGAGGAccuGG-CGGcCGCc -3'
miRNA:   3'- uUCuCGCGCUGCUUCUu--CUaGCC-GCG- -5'
10701 3' -53.9 NC_002794.1 + 86977 0.69 0.904924
Target:  5'- -cGAGCuGCGACGAGGuccGGcggcuuUCGGCGg -3'
miRNA:   3'- uuCUCG-CGCUGCUUCu--UCu-----AGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 177526 0.69 0.91691
Target:  5'- -cGAG-GUGACaAGGAGGggUGGCGCg -3'
miRNA:   3'- uuCUCgCGCUGcUUCUUCuaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 171125 0.69 0.91691
Target:  5'- -cGAGgG-GGCGAGGAcGAUCcGGUGCa -3'
miRNA:   3'- uuCUCgCgCUGCUUCUuCUAG-CCGCG- -5'
10701 3' -53.9 NC_002794.1 + 119316 0.69 0.91691
Target:  5'- cAGAGCuCGugGAGGAuc-UCGGCGa -3'
miRNA:   3'- uUCUCGcGCugCUUCUucuAGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 146177 0.69 0.898577
Target:  5'- cAGGAGCGCuuCGAGGccGA--GGCGCg -3'
miRNA:   3'- -UUCUCGCGcuGCUUCuuCUagCCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.