miRNA display CGI


Results 81 - 100 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10701 3' -53.9 NC_002794.1 + 107228 0.69 0.91691
Target:  5'- cGGcGCGCGACGggGg----CGGCGUc -3'
miRNA:   3'- uUCuCGCGCUGCuuCuucuaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 119316 0.69 0.91691
Target:  5'- cAGAGCuCGugGAGGAuc-UCGGCGa -3'
miRNA:   3'- uUCUCGcGCugCUUCUucuAGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 171125 0.69 0.91691
Target:  5'- -cGAGgG-GGCGAGGAcGAUCcGGUGCa -3'
miRNA:   3'- uuCUCgCgCUGCUUCUuCUAG-CCGCG- -5'
10701 3' -53.9 NC_002794.1 + 177526 0.69 0.91691
Target:  5'- -cGAG-GUGACaAGGAGGggUGGCGCg -3'
miRNA:   3'- uuCUCgCGCUGcUUCUUCuaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 86977 0.69 0.904924
Target:  5'- -cGAGCuGCGACGAGGuccGGcggcuuUCGGCGg -3'
miRNA:   3'- uuCUCG-CGCUGCUUCu--UCu-----AGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 102181 0.69 0.911035
Target:  5'- uGGcGCGCGGCGAGGAccuGG-CGGcCGCc -3'
miRNA:   3'- uUCuCGCGCUGCUUCUu--CUaGCC-GCG- -5'
10701 3' -53.9 NC_002794.1 + 128233 0.69 0.911035
Target:  5'- -cGAGCGCcguGACGGAGAcGGUCgucuGGuCGCg -3'
miRNA:   3'- uuCUCGCG---CUGCUUCUuCUAG----CC-GCG- -5'
10701 3' -53.9 NC_002794.1 + 149460 0.69 0.904924
Target:  5'- gAAGGGgGCGgucgaggaGCGAGGggGggCGGCa- -3'
miRNA:   3'- -UUCUCgCGC--------UGCUUCuuCuaGCCGcg -5'
10701 3' -53.9 NC_002794.1 + 78328 0.69 0.904924
Target:  5'- --cGGCGCGACGGgcGGAGGcgccggaauGUCGGCcaGCa -3'
miRNA:   3'- uucUCGCGCUGCU--UCUUC---------UAGCCG--CG- -5'
10701 3' -53.9 NC_002794.1 + 8628 0.7 0.847893
Target:  5'- cGGAGCGCGGu--GGAAGA-CGuGCGCg -3'
miRNA:   3'- uUCUCGCGCUgcuUCUUCUaGC-CGCG- -5'
10701 3' -53.9 NC_002794.1 + 177859 0.7 0.85577
Target:  5'- -cGAGCGCGgccACGAcGGAGAUCGGa-- -3'
miRNA:   3'- uuCUCGCGC---UGCUuCUUCUAGCCgcg -5'
10701 3' -53.9 NC_002794.1 + 94122 0.7 0.863445
Target:  5'- -cGAGUGCGuCGuguuGGAAGGUCcgaccgcggcGGCGCu -3'
miRNA:   3'- uuCUCGCGCuGCu---UCUUCUAG----------CCGCG- -5'
10701 3' -53.9 NC_002794.1 + 61909 0.7 0.861164
Target:  5'- -cGAGCGCaGCGAcgucgucacccucgAGGAGAUC-GCGCu -3'
miRNA:   3'- uuCUCGCGcUGCU--------------UCUUCUAGcCGCG- -5'
10701 3' -53.9 NC_002794.1 + 121742 0.7 0.863445
Target:  5'- -cGAGCacgGCGGCGAGacGGAGAUggCGGUGCc -3'
miRNA:   3'- uuCUCG---CGCUGCUU--CUUCUA--GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 115803 0.7 0.863445
Target:  5'- uGGAGCGuCGGCaGAAGcucuuccgccuGGAUCGGCGg -3'
miRNA:   3'- uUCUCGC-GCUG-CUUCu----------UCUAGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 105840 0.7 0.873836
Target:  5'- -cGAGCGgGACcGAGggGAauggacgacgugagCGGCGCc -3'
miRNA:   3'- uuCUCGCgCUGcUUCuuCUa-------------GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 37282 0.7 0.867949
Target:  5'- -cGGGCGCGGCGuacaacgacacguAGggGAacgCGGgGCa -3'
miRNA:   3'- uuCUCGCGCUGCu------------UCuuCUa--GCCgCG- -5'
10701 3' -53.9 NC_002794.1 + 142337 0.7 0.878161
Target:  5'- cGGAG-GCGGCGGAGGcggcGGAggCGGCGg -3'
miRNA:   3'- uUCUCgCGCUGCUUCU----UCUa-GCCGCg -5'
10701 3' -53.9 NC_002794.1 + 139617 0.7 0.878161
Target:  5'- cGAGAucaGCGCGACGGuggcGAAGcccaCGGUGCa -3'
miRNA:   3'- -UUCU---CGCGCUGCUu---CUUCua--GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 83878 0.7 0.847893
Target:  5'- --cGGCGCGACGGccccGGGcUCGGCGCc -3'
miRNA:   3'- uucUCGCGCUGCUuc--UUCuAGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.