Results 41 - 60 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10701 | 3' | -53.9 | NC_002794.1 | + | 99590 | 0.72 | 0.759605 |
Target: 5'- gGAGGGCGCGGCGgcGgcGcgCGcucGCGCc -3' miRNA: 3'- -UUCUCGCGCUGCuuCuuCuaGC---CGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 142577 | 0.72 | 0.77752 |
Target: 5'- aGAGcAGCGCGAUGGgcgcgcccuGGggGAUgacgagcUGGCGCa -3' miRNA: 3'- -UUC-UCGCGCUGCU---------UCuuCUA-------GCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 127127 | 0.72 | 0.750008 |
Target: 5'- -cGAGcCGCuGAUGGAGAcGAaCGGCGCg -3' miRNA: 3'- uuCUC-GCG-CUGCUUCUuCUaGCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 155212 | 0.71 | 0.831558 |
Target: 5'- ---cGCGgGACGggGucGAuUCGGUGCa -3' miRNA: 3'- uucuCGCgCUGCuuCuuCU-AGCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 110595 | 0.71 | 0.831558 |
Target: 5'- aAGGGGUGCGugaacgugaaGCGGAGcGGGAgccgCGGCGCc -3' miRNA: 3'- -UUCUCGCGC----------UGCUUC-UUCUa---GCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 128102 | 0.71 | 0.823114 |
Target: 5'- gGGGAGCuCGACGggG-GGcUCGGCGg -3' miRNA: 3'- -UUCUCGcGCUGCuuCuUCuAGCCGCg -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 42594 | 0.71 | 0.831558 |
Target: 5'- gGAGGGCGCGGCGGccGGGAgCGG-GCu -3' miRNA: 3'- -UUCUCGCGCUGCUucUUCUaGCCgCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 862 | 0.71 | 0.83982 |
Target: 5'- cAGcGCGCGcccGCGAGGc-GGUCGGCGUg -3' miRNA: 3'- uUCuCGCGC---UGCUUCuuCUAGCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 108355 | 0.71 | 0.83982 |
Target: 5'- cGGAGCGgGgaGCGGAGGAGGaccgGGCGCc -3' miRNA: 3'- uUCUCGCgC--UGCUUCUUCUag--CCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 66856 | 0.71 | 0.823114 |
Target: 5'- --cGGCGCGGCGAGGccg--CGGCGUg -3' miRNA: 3'- uucUCGCGCUGCUUCuucuaGCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 191925 | 0.71 | 0.83982 |
Target: 5'- --cGGCGaaGACG-AGAGGAUCGGCGg -3' miRNA: 3'- uucUCGCg-CUGCuUCUUCUAGCCGCg -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 71807 | 0.71 | 0.795869 |
Target: 5'- -cGGGCGCGGCGAGgccgccucgucgcGAGGAUCGcCGUc -3' miRNA: 3'- uuCUCGCGCUGCUU-------------CUUCUAGCcGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 125541 | 0.71 | 0.796771 |
Target: 5'- -cGAGCGCGGCGGcAGcGGuuucuUCGGCGa -3' miRNA: 3'- uuCUCGCGCUGCU-UCuUCu----AGCCGCg -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 105840 | 0.7 | 0.873836 |
Target: 5'- -cGAGCGgGACcGAGggGAauggacgacgugagCGGCGCc -3' miRNA: 3'- uuCUCGCgCUGcUUCuuCUa-------------GCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 115803 | 0.7 | 0.863445 |
Target: 5'- uGGAGCGuCGGCaGAAGcucuuccgccuGGAUCGGCGg -3' miRNA: 3'- uUCUCGC-GCUG-CUUCu----------UCUAGCCGCg -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 61909 | 0.7 | 0.861164 |
Target: 5'- -cGAGCGCaGCGAcgucgucacccucgAGGAGAUC-GCGCu -3' miRNA: 3'- uuCUCGCGcUGCU--------------UCUUCUAGcCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 94122 | 0.7 | 0.863445 |
Target: 5'- -cGAGUGCGuCGuguuGGAAGGUCcgaccgcggcGGCGCu -3' miRNA: 3'- uuCUCGCGCuGCu---UCUUCUAG----------CCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 177859 | 0.7 | 0.85577 |
Target: 5'- -cGAGCGCGgccACGAcGGAGAUCGGa-- -3' miRNA: 3'- uuCUCGCGC---UGCUuCUUCUAGCCgcg -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 8628 | 0.7 | 0.847893 |
Target: 5'- cGGAGCGCGGu--GGAAGA-CGuGCGCg -3' miRNA: 3'- uUCUCGCGCUgcuUCUUCUaGC-CGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 83878 | 0.7 | 0.847893 |
Target: 5'- --cGGCGCGACGGccccGGGcUCGGCGCc -3' miRNA: 3'- uucUCGCGCUGCUuc--UUCuAGCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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