miRNA display CGI


Results 41 - 60 of 155 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10701 3' -53.9 NC_002794.1 + 79427 0.72 0.778451
Target:  5'- cAAGGGCccggcgGCGGCGgcGgcGAcCGGCGCg -3'
miRNA:   3'- -UUCUCG------CGCUGCuuCuuCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 115898 0.72 0.787681
Target:  5'- cGGAGCGCGGgggguucgUGggGuGGAcUUGGCGCg -3'
miRNA:   3'- uUCUCGCGCU--------GCuuCuUCU-AGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 62488 0.72 0.787681
Target:  5'- -cGAGCGCGAgUGGAcGgcGggCGGCGCc -3'
miRNA:   3'- uuCUCGCGCU-GCUU-CuuCuaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 71807 0.71 0.795869
Target:  5'- -cGGGCGCGGCGAGgccgccucgucgcGAGGAUCGcCGUc -3'
miRNA:   3'- uuCUCGCGCUGCUU-------------CUUCUAGCcGCG- -5'
10701 3' -53.9 NC_002794.1 + 125541 0.71 0.796771
Target:  5'- -cGAGCGCGGCGGcAGcGGuuucuUCGGCGa -3'
miRNA:   3'- uuCUCGCGCUGCU-UCuUCu----AGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 66856 0.71 0.823114
Target:  5'- --cGGCGCGGCGAGGccg--CGGCGUg -3'
miRNA:   3'- uucUCGCGCUGCUUCuucuaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 128102 0.71 0.823114
Target:  5'- gGGGAGCuCGACGggG-GGcUCGGCGg -3'
miRNA:   3'- -UUCUCGcGCUGCuuCuUCuAGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 155212 0.71 0.831558
Target:  5'- ---cGCGgGACGggGucGAuUCGGUGCa -3'
miRNA:   3'- uucuCGCgCUGCuuCuuCU-AGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 42594 0.71 0.831558
Target:  5'- gGAGGGCGCGGCGGccGGGAgCGG-GCu -3'
miRNA:   3'- -UUCUCGCGCUGCUucUUCUaGCCgCG- -5'
10701 3' -53.9 NC_002794.1 + 110595 0.71 0.831558
Target:  5'- aAGGGGUGCGugaacgugaaGCGGAGcGGGAgccgCGGCGCc -3'
miRNA:   3'- -UUCUCGCGC----------UGCUUC-UUCUa---GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 862 0.71 0.83982
Target:  5'- cAGcGCGCGcccGCGAGGc-GGUCGGCGUg -3'
miRNA:   3'- uUCuCGCGC---UGCUUCuuCUAGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 191925 0.71 0.83982
Target:  5'- --cGGCGaaGACG-AGAGGAUCGGCGg -3'
miRNA:   3'- uucUCGCg-CUGCuUCUUCUAGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 108355 0.71 0.83982
Target:  5'- cGGAGCGgGgaGCGGAGGAGGaccgGGCGCc -3'
miRNA:   3'- uUCUCGCgC--UGCUUCUUCUag--CCGCG- -5'
10701 3' -53.9 NC_002794.1 + 55274 0.7 0.847893
Target:  5'- gGGGGGCggcgguggcgGCGACGAGGgcGGcggCGGCGUc -3'
miRNA:   3'- -UUCUCG----------CGCUGCUUCuuCUa--GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 83878 0.7 0.847893
Target:  5'- --cGGCGCGACGGccccGGGcUCGGCGCc -3'
miRNA:   3'- uucUCGCGCUGCUuc--UUCuAGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 8628 0.7 0.847893
Target:  5'- cGGAGCGCGGu--GGAAGA-CGuGCGCg -3'
miRNA:   3'- uUCUCGCGCUgcuUCUUCUaGC-CGCG- -5'
10701 3' -53.9 NC_002794.1 + 177859 0.7 0.85577
Target:  5'- -cGAGCGCGgccACGAcGGAGAUCGGa-- -3'
miRNA:   3'- uuCUCGCGC---UGCUuCUUCUAGCCgcg -5'
10701 3' -53.9 NC_002794.1 + 61909 0.7 0.861164
Target:  5'- -cGAGCGCaGCGAcgucgucacccucgAGGAGAUC-GCGCu -3'
miRNA:   3'- uuCUCGCGcUGCU--------------UCUUCUAGcCGCG- -5'
10701 3' -53.9 NC_002794.1 + 121742 0.7 0.863445
Target:  5'- -cGAGCacgGCGGCGAGacGGAGAUggCGGUGCc -3'
miRNA:   3'- uuCUCG---CGCUGCUU--CUUCUA--GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 94122 0.7 0.863445
Target:  5'- -cGAGUGCGuCGuguuGGAAGGUCcgaccgcggcGGCGCu -3'
miRNA:   3'- uuCUCGCGCuGCu---UCUUCUAG----------CCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.