miRNA display CGI


Results 61 - 80 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10701 3' -53.9 NC_002794.1 + 115803 0.7 0.863445
Target:  5'- uGGAGCGuCGGCaGAAGcucuuccgccuGGAUCGGCGg -3'
miRNA:   3'- uUCUCGC-GCUG-CUUCu----------UCUAGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 37282 0.7 0.867949
Target:  5'- -cGGGCGCGGCGuacaacgacacguAGggGAacgCGGgGCa -3'
miRNA:   3'- uuCUCGCGCUGCu------------UCuuCUa--GCCgCG- -5'
10701 3' -53.9 NC_002794.1 + 105840 0.7 0.873836
Target:  5'- -cGAGCGgGACcGAGggGAauggacgacgugagCGGCGCc -3'
miRNA:   3'- uuCUCGCgCUGcUUCuuCUa-------------GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 139617 0.7 0.878161
Target:  5'- cGAGAucaGCGCGACGGuggcGAAGcccaCGGUGCa -3'
miRNA:   3'- -UUCU---CGCGCUGCUu---CUUCua--GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 142337 0.7 0.878161
Target:  5'- cGGAG-GCGGCGGAGGcggcGGAggCGGCGg -3'
miRNA:   3'- uUCUCgCGCUGCUUCU----UCUa-GCCGCg -5'
10701 3' -53.9 NC_002794.1 + 98933 0.7 0.881
Target:  5'- -uGGGCGCGGCcGGGAAGGggcuggggcucgugcUgGGCGCc -3'
miRNA:   3'- uuCUCGCGCUGcUUCUUCU---------------AgCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 92314 0.69 0.883106
Target:  5'- -uGGGCGCgGGCGgcGggGGcccgggcgggcggcUCGGCGUc -3'
miRNA:   3'- uuCUCGCG-CUGCuuCuuCU--------------AGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 62080 0.69 0.885192
Target:  5'- --cGGCgGCGACGAcGgcGAcgCGGCGCg -3'
miRNA:   3'- uucUCG-CGCUGCUuCuuCUa-GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 8740 0.69 0.887942
Target:  5'- uGGAGCGCGugucucgggcgugucGCGAcggcguGAAGA-CGGCGUg -3'
miRNA:   3'- uUCUCGCGC---------------UGCUu-----CUUCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 108158 0.69 0.891328
Target:  5'- cGGGAGCGCcggcGCGAAGAcgccgcgacgcgcGGAcugcgagCGGCGCu -3'
miRNA:   3'- -UUCUCGCGc---UGCUUCU-------------UCUa------GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 50582 0.69 0.891999
Target:  5'- -cGuGCGCGGCGGcuGGguGGcCGGCGCc -3'
miRNA:   3'- uuCuCGCGCUGCU--UCuuCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 122198 0.69 0.891999
Target:  5'- -cGA-CGCGGCGAAGcGGugcCGGCGCc -3'
miRNA:   3'- uuCUcGCGCUGCUUCuUCua-GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 151710 0.69 0.891999
Target:  5'- -cGAGCGCGccagucgcGCGAAGGAcgucGUCGGcCGCc -3'
miRNA:   3'- uuCUCGCGC--------UGCUUCUUc---UAGCC-GCG- -5'
10701 3' -53.9 NC_002794.1 + 92272 0.69 0.898577
Target:  5'- --cGGCGCcgGGCGAGGcgcgcAAGGUCGGCGa -3'
miRNA:   3'- uucUCGCG--CUGCUUC-----UUCUAGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 159894 0.69 0.898577
Target:  5'- gGAGGGCGgGguaGCGAAGGguagguGGGUCGGCu- -3'
miRNA:   3'- -UUCUCGCgC---UGCUUCU------UCUAGCCGcg -5'
10701 3' -53.9 NC_002794.1 + 146177 0.69 0.898577
Target:  5'- cAGGAGCGCuuCGAGGccGA--GGCGCg -3'
miRNA:   3'- -UUCUCGCGcuGCUUCuuCUagCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 180807 0.69 0.904299
Target:  5'- -uGAGCGaCGucucggacucuggGCGggGAGGAgccCGGCGUc -3'
miRNA:   3'- uuCUCGC-GC-------------UGCuuCUUCUa--GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 78328 0.69 0.904924
Target:  5'- --cGGCGCGACGGgcGGAGGcgccggaauGUCGGCcaGCa -3'
miRNA:   3'- uucUCGCGCUGCU--UCUUC---------UAGCCG--CG- -5'
10701 3' -53.9 NC_002794.1 + 149460 0.69 0.904924
Target:  5'- gAAGGGgGCGgucgaggaGCGAGGggGggCGGCa- -3'
miRNA:   3'- -UUCUCgCGC--------UGCUUCuuCuaGCCGcg -5'
10701 3' -53.9 NC_002794.1 + 86977 0.69 0.904924
Target:  5'- -cGAGCuGCGACGAGGuccGGcggcuuUCGGCGg -3'
miRNA:   3'- uuCUCG-CGCUGCUUCu--UCu-----AGCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.