miRNA display CGI


Results 81 - 100 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10701 3' -53.9 NC_002794.1 + 128233 0.69 0.911035
Target:  5'- -cGAGCGCcguGACGGAGAcGGUCgucuGGuCGCg -3'
miRNA:   3'- uuCUCGCG---CUGCUUCUuCUAG----CC-GCG- -5'
10701 3' -53.9 NC_002794.1 + 102181 0.69 0.911035
Target:  5'- uGGcGCGCGGCGAGGAccuGG-CGGcCGCc -3'
miRNA:   3'- uUCuCGCGCUGCUUCUu--CUaGCC-GCG- -5'
10701 3' -53.9 NC_002794.1 + 107228 0.69 0.91691
Target:  5'- cGGcGCGCGACGggGg----CGGCGUc -3'
miRNA:   3'- uUCuCGCGCUGCuuCuucuaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 119316 0.69 0.91691
Target:  5'- cAGAGCuCGugGAGGAuc-UCGGCGa -3'
miRNA:   3'- uUCUCGcGCugCUUCUucuAGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 177526 0.69 0.91691
Target:  5'- -cGAG-GUGACaAGGAGGggUGGCGCg -3'
miRNA:   3'- uuCUCgCGCUGcUUCUUCuaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 171125 0.69 0.91691
Target:  5'- -cGAGgG-GGCGAGGAcGAUCcGGUGCa -3'
miRNA:   3'- uuCUCgCgCUGCUUCUuCUAG-CCGCG- -5'
10701 3' -53.9 NC_002794.1 + 146523 0.68 0.921994
Target:  5'- cGGGAcCGCGACGGauccGGAGGAcgcgacgaaaagcUCGGCGg -3'
miRNA:   3'- -UUCUcGCGCUGCU----UCUUCU-------------AGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 91130 0.68 0.922547
Target:  5'- ---cGUGCGugGAGGAGGcgCGGaCGg -3'
miRNA:   3'- uucuCGCGCugCUUCUUCuaGCC-GCg -5'
10701 3' -53.9 NC_002794.1 + 154188 0.68 0.922547
Target:  5'- cAGGGcCGcCGACGAucuGGAGAcgcUGGCGCg -3'
miRNA:   3'- uUCUC-GC-GCUGCUu--CUUCUa--GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 109147 0.68 0.922547
Target:  5'- gGAGGGgGaGGCGggGGAGAU-GGCGa -3'
miRNA:   3'- -UUCUCgCgCUGCuuCUUCUAgCCGCg -5'
10701 3' -53.9 NC_002794.1 + 38491 0.68 0.922547
Target:  5'- gAGGaAGCGCGGCGgcGccGGUCGcCGCc -3'
miRNA:   3'- -UUC-UCGCGCUGCuuCuuCUAGCcGCG- -5'
10701 3' -53.9 NC_002794.1 + 112319 0.68 0.925814
Target:  5'- --cGGCGcCGACGgcGggGAgcgcgccggccggCGGCGCc -3'
miRNA:   3'- uucUCGC-GCUGCuuCuuCUa------------GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 89546 0.68 0.927944
Target:  5'- cAGA-CGCGACGGAGGAGcGUCGuGCcgaGCg -3'
miRNA:   3'- uUCUcGCGCUGCUUCUUC-UAGC-CG---CG- -5'
10701 3' -53.9 NC_002794.1 + 185623 0.68 0.927944
Target:  5'- -cGAGCGaCGGCGAGcGAGAcucgagCGGCGg -3'
miRNA:   3'- uuCUCGC-GCUGCUUcUUCUa-----GCCGCg -5'
10701 3' -53.9 NC_002794.1 + 94420 0.68 0.927944
Target:  5'- uGGGGCGCGccCGAcaaccuGGAGGccuaCGGCGCg -3'
miRNA:   3'- uUCUCGCGCu-GCU------UCUUCua--GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 21913 0.68 0.927944
Target:  5'- uGGuG-GCGGCGGAGAcgacggcggcGGcgCGGCGCu -3'
miRNA:   3'- uUCuCgCGCUGCUUCU----------UCuaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 134131 0.68 0.933102
Target:  5'- --cGGCGCGGCGAgcgcGGAAGcUCGGUcCg -3'
miRNA:   3'- uucUCGCGCUGCU----UCUUCuAGCCGcG- -5'
10701 3' -53.9 NC_002794.1 + 107131 0.68 0.938021
Target:  5'- -uGAcCGCGACG-GGAAcGAcgUCGGCGCc -3'
miRNA:   3'- uuCUcGCGCUGCuUCUU-CU--AGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 129208 0.68 0.938021
Target:  5'- -cGAGCGgcCGACGgcGGuGGAUaGGCGCg -3'
miRNA:   3'- uuCUCGC--GCUGCuuCU-UCUAgCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 48576 0.68 0.942702
Target:  5'- cAGAuGgGCGAgcCGGAGGAG--CGGCGCg -3'
miRNA:   3'- uUCU-CgCGCU--GCUUCUUCuaGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.