Results 61 - 80 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10701 | 3' | -53.9 | NC_002794.1 | + | 95763 | 0.66 | 0.968734 |
Target: 5'- cGGGGCggcggccGCGACGGcggccggggcgAGAGGcgCGGCGg -3' miRNA: 3'- uUCUCG-------CGCUGCU-----------UCUUCuaGCCGCg -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 95815 | 0.76 | 0.548118 |
Target: 5'- gGGGAGCgGCGGCGGccGGggGAgCGGCGg -3' miRNA: 3'- -UUCUCG-CGCUGCU--UCuuCUaGCCGCg -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 98933 | 0.7 | 0.881 |
Target: 5'- -uGGGCGCGGCcGGGAAGGggcuggggcucgugcUgGGCGCc -3' miRNA: 3'- uuCUCGCGCUGcUUCUUCU---------------AgCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 99590 | 0.72 | 0.759605 |
Target: 5'- gGAGGGCGCGGCGgcGgcGcgCGcucGCGCc -3' miRNA: 3'- -UUCUCGCGCUGCuuCuuCuaGC---CGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 100222 | 0.75 | 0.629366 |
Target: 5'- -cGAGgGCGuCGAGGucuucGAGGUCGGCGUc -3' miRNA: 3'- uuCUCgCGCuGCUUC-----UUCUAGCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 101283 | 0.67 | 0.956865 |
Target: 5'- --uGGCgGCGGCGggGAGGAgacgacguaccagGGCGCc -3' miRNA: 3'- uucUCG-CGCUGCuuCUUCUag-----------CCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 101432 | 0.74 | 0.639609 |
Target: 5'- ---uGCGCGACGAuccGggGAcgcCGGCGCg -3' miRNA: 3'- uucuCGCGCUGCUu--CuuCUa--GCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 101687 | 0.66 | 0.975645 |
Target: 5'- cGGAGCGCGAgcccgagccggcgccCGAGGAcGuguucgUGGUGCa -3' miRNA: 3'- uUCUCGCGCU---------------GCUUCUuCua----GCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 101793 | 0.67 | 0.947146 |
Target: 5'- -cGAGUGCuGCGccGcuGGUUGGCGCa -3' miRNA: 3'- uuCUCGCGcUGCuuCuuCUAGCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 102181 | 0.69 | 0.911035 |
Target: 5'- uGGcGCGCGGCGAGGAccuGG-CGGcCGCc -3' miRNA: 3'- uUCuCGCGCUGCUUCUu--CUaGCC-GCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 102449 | 0.74 | 0.69057 |
Target: 5'- -cGAGC-UGACGcucGAGGAGAUgCGGCGCg -3' miRNA: 3'- uuCUCGcGCUGC---UUCUUCUA-GCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 105840 | 0.7 | 0.873836 |
Target: 5'- -cGAGCGgGACcGAGggGAauggacgacgugagCGGCGCc -3' miRNA: 3'- uuCUCGCgCUGcUUCuuCUa-------------GCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 105886 | 0.66 | 0.978534 |
Target: 5'- --uGGgGgGugGGAGAGGAgucgccgcggcggCGGCGCu -3' miRNA: 3'- uucUCgCgCugCUUCUUCUa------------GCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 106432 | 0.67 | 0.95909 |
Target: 5'- --uGGCGCuGuuGGAGAAGG-CGGUGCa -3' miRNA: 3'- uucUCGCG-CugCUUCUUCUaGCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 107131 | 0.68 | 0.938021 |
Target: 5'- -uGAcCGCGACG-GGAAcGAcgUCGGCGCc -3' miRNA: 3'- uuCUcGCGCUGCuUCUU-CU--AGCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 107228 | 0.69 | 0.91691 |
Target: 5'- cGGcGCGCGACGggGg----CGGCGUc -3' miRNA: 3'- uUCuCGCGCUGCuuCuucuaGCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 107582 | 0.72 | 0.750008 |
Target: 5'- cGGAGa-CGGCGGAGAAGA-CGGCGg -3' miRNA: 3'- uUCUCgcGCUGCUUCUUCUaGCCGCg -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 107630 | 0.66 | 0.971928 |
Target: 5'- --uGGCgGUGACGAAGAGGA---GCGCg -3' miRNA: 3'- uucUCG-CGCUGCUUCUUCUagcCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 108158 | 0.69 | 0.891328 |
Target: 5'- cGGGAGCGCcggcGCGAAGAcgccgcgacgcgcGGAcugcgagCGGCGCu -3' miRNA: 3'- -UUCUCGCGc---UGCUUCU-------------UCUa------GCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 108355 | 0.71 | 0.83982 |
Target: 5'- cGGAGCGgGgaGCGGAGGAGGaccgGGCGCc -3' miRNA: 3'- uUCUCGCgC--UGCUUCUUCUag--CCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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