miRNA display CGI


Results 81 - 100 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10701 3' -53.9 NC_002794.1 + 108385 0.67 0.947146
Target:  5'- cGGAGCGgGgaGCGGAGGcuccGGcggCGGCGCc -3'
miRNA:   3'- uUCUCGCgC--UGCUUCU----UCua-GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 109147 0.68 0.922547
Target:  5'- gGAGGGgGaGGCGggGGAGAU-GGCGa -3'
miRNA:   3'- -UUCUCgCgCUGCuuCUUCUAgCCGCg -5'
10701 3' -53.9 NC_002794.1 + 110488 0.68 0.942702
Target:  5'- aGAGAGgcggugGCGGCGccugGAGAaagucggucgAGAUCGGCGUg -3'
miRNA:   3'- -UUCUCg-----CGCUGC----UUCU----------UCUAGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 110595 0.71 0.831558
Target:  5'- aAGGGGUGCGugaacgugaaGCGGAGcGGGAgccgCGGCGCc -3'
miRNA:   3'- -UUCUCGCGC----------UGCUUC-UUCUa---GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 111307 0.67 0.951357
Target:  5'- --cAGCcCGACGGAGAcgccGGGccagCGGCGCg -3'
miRNA:   3'- uucUCGcGCUGCUUCU----UCUa---GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 112125 0.73 0.700651
Target:  5'- --cGGCGCGGgGAGGuAGAUCGGCa- -3'
miRNA:   3'- uucUCGCGCUgCUUCuUCUAGCCGcg -5'
10701 3' -53.9 NC_002794.1 + 112319 0.68 0.925814
Target:  5'- --cGGCGcCGACGgcGggGAgcgcgccggccggCGGCGCc -3'
miRNA:   3'- uucUCGC-GCUGCuuCuuCUa------------GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 113672 0.67 0.95909
Target:  5'- --cAGCGCGGCGAGcAGGcccgccaccGUCGGCaGCg -3'
miRNA:   3'- uucUCGCGCUGCUUcUUC---------UAGCCG-CG- -5'
10701 3' -53.9 NC_002794.1 + 115719 0.67 0.962621
Target:  5'- cAGGAGCcacuggGCGGuCGggGGgcccuggaucAGGUaCGGCGCg -3'
miRNA:   3'- -UUCUCG------CGCU-GCuuCU----------UCUA-GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 115803 0.7 0.863445
Target:  5'- uGGAGCGuCGGCaGAAGcucuuccgccuGGAUCGGCGg -3'
miRNA:   3'- uUCUCGC-GCUG-CUUCu----------UCUAGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 115898 0.72 0.787681
Target:  5'- cGGAGCGCGGgggguucgUGggGuGGAcUUGGCGCg -3'
miRNA:   3'- uUCUCGCGCU--------GCuuCuUCU-AGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 115974 0.79 0.416024
Target:  5'- gGGGAGCGgGACGggGAg---CGGCGCc -3'
miRNA:   3'- -UUCUCGCgCUGCuuCUucuaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 116001 0.67 0.962621
Target:  5'- gGAGAcCGCGgagaccGCGguGgcGAUUGGCGCg -3'
miRNA:   3'- -UUCUcGCGC------UGCuuCuuCUAGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 116058 0.81 0.312388
Target:  5'- gGGGAGCGCGACuGggGucgcGGAgcgcUCGGCGCg -3'
miRNA:   3'- -UUCUCGCGCUG-CuuCu---UCU----AGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 116734 0.67 0.953773
Target:  5'- -cGAGCGUGuuggcgacgccgcCGAGGAAGG-CGGCuGCa -3'
miRNA:   3'- uuCUCGCGCu------------GCUUCUUCUaGCCG-CG- -5'
10701 3' -53.9 NC_002794.1 + 117851 0.79 0.381959
Target:  5'- cGGAGCGCGACGggGGc---UGGCGCg -3'
miRNA:   3'- uUCUCGCGCUGCuuCUucuaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 119316 0.69 0.91691
Target:  5'- cAGAGCuCGugGAGGAuc-UCGGCGa -3'
miRNA:   3'- uUCUCGcGCugCUUCUucuAGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 120125 0.66 0.979438
Target:  5'- ---cGCGCGACGgcGAccggggacGGGcCGGUGCc -3'
miRNA:   3'- uucuCGCGCUGCuuCU--------UCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 121153 0.67 0.955337
Target:  5'- -cGAG-GCuGCGAAGGcguucAGAUCGGCaGCg -3'
miRNA:   3'- uuCUCgCGcUGCUUCU-----UCUAGCCG-CG- -5'
10701 3' -53.9 NC_002794.1 + 121581 0.66 0.977123
Target:  5'- --cAGCGUGACGGGcgcGggGucguUCGGCGa -3'
miRNA:   3'- uucUCGCGCUGCUU---CuuCu---AGCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.