miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10701 3' -53.9 NC_002794.1 + 147077 0.73 0.700651
Target:  5'- -cGGGCGCccgguccaagGACGAAGgcG-UCGGCGCc -3'
miRNA:   3'- uuCUCGCG----------CUGCUUCuuCuAGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 146935 0.67 0.951357
Target:  5'- gGAGAGCGCucggucuGGCGuggcucucucuucauGGAccgccugucgcgAGGUCGGCGCc -3'
miRNA:   3'- -UUCUCGCG-------CUGCu--------------UCU------------UCUAGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 146661 0.76 0.578333
Target:  5'- -cGAGcCGUugcugGACGAGGAGGAcgucUCGGCGCu -3'
miRNA:   3'- uuCUC-GCG-----CUGCUUCUUCU----AGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 146523 0.68 0.921994
Target:  5'- cGGGAcCGCGACGGauccGGAGGAcgcgacgaaaagcUCGGCGg -3'
miRNA:   3'- -UUCUcGCGCUGCU----UCUUCU-------------AGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 146177 0.69 0.898577
Target:  5'- cAGGAGCGCuuCGAGGccGA--GGCGCg -3'
miRNA:   3'- -UUCUCGCGcuGCUUCuuCUagCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 145899 0.81 0.312388
Target:  5'- -cGAGCGCGACGggGGAG-UCGaccGCGCc -3'
miRNA:   3'- uuCUCGCGCUGCuuCUUCuAGC---CGCG- -5'
10701 3' -53.9 NC_002794.1 + 145613 0.79 0.3903
Target:  5'- -cGGGCGCGACGAGGAgcucggcccggAGAUCGGacccgaGCu -3'
miRNA:   3'- uuCUCGCGCUGCUUCU-----------UCUAGCCg-----CG- -5'
10701 3' -53.9 NC_002794.1 + 143309 0.74 0.69057
Target:  5'- --cAGCGCGGCGGgauGGAAG-UCGGuCGCg -3'
miRNA:   3'- uucUCGCGCUGCU---UCUUCuAGCC-GCG- -5'
10701 3' -53.9 NC_002794.1 + 142765 0.66 0.974622
Target:  5'- --uGGUGUGACgGAAGAcGAUCucguacGGCGCg -3'
miRNA:   3'- uucUCGCGCUG-CUUCUuCUAG------CCGCG- -5'
10701 3' -53.9 NC_002794.1 + 142577 0.72 0.77752
Target:  5'- aGAGcAGCGCGAUGGgcgcgcccuGGggGAUgacgagcUGGCGCa -3'
miRNA:   3'- -UUC-UCGCGCUGCU---------UCuuCUA-------GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 142380 0.74 0.649846
Target:  5'- gGAGGGaGCGGCGGAGAcGG-CGGUGCa -3'
miRNA:   3'- -UUCUCgCGCUGCUUCUuCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 142337 0.7 0.878161
Target:  5'- cGGAG-GCGGCGGAGGcggcGGAggCGGCGg -3'
miRNA:   3'- uUCUCgCGCUGCUUCU----UCUa-GCCGCg -5'
10701 3' -53.9 NC_002794.1 + 142297 0.66 0.969034
Target:  5'- uAGGAGgcgguacagGUGGCGGAGgcGG-CGGCGCa -3'
miRNA:   3'- -UUCUCg--------CGCUGCUUCuuCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 141426 0.74 0.667213
Target:  5'- -cGGGgGCGGCGggGGcgccgggggcgccgGGAgCGGCGCg -3'
miRNA:   3'- uuCUCgCGCUGCuuCU--------------UCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 141351 0.73 0.700651
Target:  5'- cGAGAGCaGCGACGAGagcggcGGAGAgaaCGGCGa -3'
miRNA:   3'- -UUCUCG-CGCUGCUU------CUUCUa--GCCGCg -5'
10701 3' -53.9 NC_002794.1 + 140554 0.66 0.976393
Target:  5'- cGAGGGaCGCGACGAccugcGGugucAGAauccguucgcccugUCGGUGCu -3'
miRNA:   3'- -UUCUC-GCGCUGCU-----UCu---UCU--------------AGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 140240 0.66 0.974622
Target:  5'- aGAGAGCGgGGaaaGAAGggGAaagaaggagagcUCGcCGCg -3'
miRNA:   3'- -UUCUCGCgCUg--CUUCuuCU------------AGCcGCG- -5'
10701 3' -53.9 NC_002794.1 + 139987 0.73 0.720631
Target:  5'- -uGAGCGCGACGcGGGA---CGGUGCg -3'
miRNA:   3'- uuCUCGCGCUGCuUCUUcuaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 139617 0.7 0.878161
Target:  5'- cGAGAucaGCGCGACGGuggcGAAGcccaCGGUGCa -3'
miRNA:   3'- -UUCU---CGCGCUGCUu---CUUCua--GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 138596 0.66 0.965934
Target:  5'- --cGGCGCGGCGGAGAg---CGGCu- -3'
miRNA:   3'- uucUCGCGCUGCUUCUucuaGCCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.