miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10701 3' -53.9 NC_002794.1 + 136142 0.77 0.508655
Target:  5'- gGAGGGCGaggacgggGGCGAAGAGGAagucuUCGGUGCu -3'
miRNA:   3'- -UUCUCGCg-------CUGCUUCUUCU-----AGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 134131 0.68 0.933102
Target:  5'- --cGGCGCGGCGAgcgcGGAAGcUCGGUcCg -3'
miRNA:   3'- uucUCGCGCUGCU----UCUUCuAGCCGcG- -5'
10701 3' -53.9 NC_002794.1 + 131720 0.67 0.955337
Target:  5'- cGAGAGCgaGCGAgCGGGcGAGAUC-GCGCu -3'
miRNA:   3'- -UUCUCG--CGCU-GCUUcUUCUAGcCGCG- -5'
10701 3' -53.9 NC_002794.1 + 129871 0.73 0.730512
Target:  5'- gGGGGGCGCacgagaagugGACGcGGGAGAgcgaaCGGCGCu -3'
miRNA:   3'- -UUCUCGCG----------CUGCuUCUUCUa----GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 129208 0.68 0.938021
Target:  5'- -cGAGCGgcCGACGgcGGuGGAUaGGCGCg -3'
miRNA:   3'- uuCUCGC--GCUGCuuCU-UCUAgCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 128233 0.69 0.911035
Target:  5'- -cGAGCGCcguGACGGAGAcGGUCgucuGGuCGCg -3'
miRNA:   3'- uuCUCGCG---CUGCUUCUuCUAG----CC-GCG- -5'
10701 3' -53.9 NC_002794.1 + 128102 0.71 0.823114
Target:  5'- gGGGAGCuCGACGggG-GGcUCGGCGg -3'
miRNA:   3'- -UUCUCGcGCUGCuuCuUCuAGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 127127 0.72 0.750008
Target:  5'- -cGAGcCGCuGAUGGAGAcGAaCGGCGCg -3'
miRNA:   3'- uuCUC-GCG-CUGCUUCUuCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 126701 0.73 0.730512
Target:  5'- gAGGGGCGCcgcggacucggGGCGAGGggGGUgGGUGg -3'
miRNA:   3'- -UUCUCGCG-----------CUGCUUCuuCUAgCCGCg -5'
10701 3' -53.9 NC_002794.1 + 125541 0.71 0.796771
Target:  5'- -cGAGCGCGGCGGcAGcGGuuucuUCGGCGa -3'
miRNA:   3'- uuCUCGCGCUGCU-UCuUCu----AGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 125448 0.66 0.979438
Target:  5'- cAAGGGCGaCGGCGgcGAGca-CGGcCGCg -3'
miRNA:   3'- -UUCUCGC-GCUGCuuCUUcuaGCC-GCG- -5'
10701 3' -53.9 NC_002794.1 + 123810 0.78 0.451886
Target:  5'- cGGGGGCGCgGACGAGcAGGAgCGGCGCc -3'
miRNA:   3'- -UUCUCGCG-CUGCUUcUUCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 122198 0.69 0.891999
Target:  5'- -cGA-CGCGGCGAAGcGGugcCGGCGCc -3'
miRNA:   3'- uuCUcGCGCUGCUUCuUCua-GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 121991 0.66 0.965934
Target:  5'- -cGAGCGCGGCcGGGAGcuguuccacgucGucuucuUCGGCGCc -3'
miRNA:   3'- uuCUCGCGCUGcUUCUU------------Cu-----AGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 121742 0.7 0.863445
Target:  5'- -cGAGCacgGCGGCGAGacGGAGAUggCGGUGCc -3'
miRNA:   3'- uuCUCG---CGCUGCUU--CUUCUA--GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 121581 0.66 0.977123
Target:  5'- --cAGCGUGACGGGcgcGggGucguUCGGCGa -3'
miRNA:   3'- uucUCGCGCUGCUU---CuuCu---AGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 121153 0.67 0.955337
Target:  5'- -cGAG-GCuGCGAAGGcguucAGAUCGGCaGCg -3'
miRNA:   3'- uuCUCgCGcUGCUUCU-----UCUAGCCG-CG- -5'
10701 3' -53.9 NC_002794.1 + 120125 0.66 0.979438
Target:  5'- ---cGCGCGACGgcGAccggggacGGGcCGGUGCc -3'
miRNA:   3'- uucuCGCGCUGCuuCU--------UCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 119316 0.69 0.91691
Target:  5'- cAGAGCuCGugGAGGAuc-UCGGCGa -3'
miRNA:   3'- uUCUCGcGCugCUUCUucuAGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 117851 0.79 0.381959
Target:  5'- cGGAGCGCGACGggGGc---UGGCGCg -3'
miRNA:   3'- uUCUCGCGCUGCuuCUucuaGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.