Results 61 - 80 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10701 | 3' | -53.9 | NC_002794.1 | + | 116734 | 0.67 | 0.953773 |
Target: 5'- -cGAGCGUGuuggcgacgccgcCGAGGAAGG-CGGCuGCa -3' miRNA: 3'- uuCUCGCGCu------------GCUUCUUCUaGCCG-CG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 116058 | 0.81 | 0.312388 |
Target: 5'- gGGGAGCGCGACuGggGucgcGGAgcgcUCGGCGCg -3' miRNA: 3'- -UUCUCGCGCUG-CuuCu---UCU----AGCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 116001 | 0.67 | 0.962621 |
Target: 5'- gGAGAcCGCGgagaccGCGguGgcGAUUGGCGCg -3' miRNA: 3'- -UUCUcGCGC------UGCuuCuuCUAGCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 115974 | 0.79 | 0.416024 |
Target: 5'- gGGGAGCGgGACGggGAg---CGGCGCc -3' miRNA: 3'- -UUCUCGCgCUGCuuCUucuaGCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 115898 | 0.72 | 0.787681 |
Target: 5'- cGGAGCGCGGgggguucgUGggGuGGAcUUGGCGCg -3' miRNA: 3'- uUCUCGCGCU--------GCuuCuUCU-AGCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 115803 | 0.7 | 0.863445 |
Target: 5'- uGGAGCGuCGGCaGAAGcucuuccgccuGGAUCGGCGg -3' miRNA: 3'- uUCUCGC-GCUG-CUUCu----------UCUAGCCGCg -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 115719 | 0.67 | 0.962621 |
Target: 5'- cAGGAGCcacuggGCGGuCGggGGgcccuggaucAGGUaCGGCGCg -3' miRNA: 3'- -UUCUCG------CGCU-GCuuCU----------UCUA-GCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 113672 | 0.67 | 0.95909 |
Target: 5'- --cAGCGCGGCGAGcAGGcccgccaccGUCGGCaGCg -3' miRNA: 3'- uucUCGCGCUGCUUcUUC---------UAGCCG-CG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 112319 | 0.68 | 0.925814 |
Target: 5'- --cGGCGcCGACGgcGggGAgcgcgccggccggCGGCGCc -3' miRNA: 3'- uucUCGC-GCUGCuuCuuCUa------------GCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 112125 | 0.73 | 0.700651 |
Target: 5'- --cGGCGCGGgGAGGuAGAUCGGCa- -3' miRNA: 3'- uucUCGCGCUgCUUCuUCUAGCCGcg -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 111307 | 0.67 | 0.951357 |
Target: 5'- --cAGCcCGACGGAGAcgccGGGccagCGGCGCg -3' miRNA: 3'- uucUCGcGCUGCUUCU----UCUa---GCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 110595 | 0.71 | 0.831558 |
Target: 5'- aAGGGGUGCGugaacgugaaGCGGAGcGGGAgccgCGGCGCc -3' miRNA: 3'- -UUCUCGCGC----------UGCUUC-UUCUa---GCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 110488 | 0.68 | 0.942702 |
Target: 5'- aGAGAGgcggugGCGGCGccugGAGAaagucggucgAGAUCGGCGUg -3' miRNA: 3'- -UUCUCg-----CGCUGC----UUCU----------UCUAGCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 109147 | 0.68 | 0.922547 |
Target: 5'- gGAGGGgGaGGCGggGGAGAU-GGCGa -3' miRNA: 3'- -UUCUCgCgCUGCuuCUUCUAgCCGCg -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 108385 | 0.67 | 0.947146 |
Target: 5'- cGGAGCGgGgaGCGGAGGcuccGGcggCGGCGCc -3' miRNA: 3'- uUCUCGCgC--UGCUUCU----UCua-GCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 108355 | 0.71 | 0.83982 |
Target: 5'- cGGAGCGgGgaGCGGAGGAGGaccgGGCGCc -3' miRNA: 3'- uUCUCGCgC--UGCUUCUUCUag--CCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 108158 | 0.69 | 0.891328 |
Target: 5'- cGGGAGCGCcggcGCGAAGAcgccgcgacgcgcGGAcugcgagCGGCGCu -3' miRNA: 3'- -UUCUCGCGc---UGCUUCU-------------UCUa------GCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 107630 | 0.66 | 0.971928 |
Target: 5'- --uGGCgGUGACGAAGAGGA---GCGCg -3' miRNA: 3'- uucUCG-CGCUGCUUCUUCUagcCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 107582 | 0.72 | 0.750008 |
Target: 5'- cGGAGa-CGGCGGAGAAGA-CGGCGg -3' miRNA: 3'- uUCUCgcGCUGCUUCUUCUaGCCGCg -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 107228 | 0.69 | 0.91691 |
Target: 5'- cGGcGCGCGACGggGg----CGGCGUc -3' miRNA: 3'- uUCuCGCGCUGCuuCuucuaGCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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