miRNA display CGI


Results 81 - 100 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10701 3' -53.9 NC_002794.1 + 107131 0.68 0.938021
Target:  5'- -uGAcCGCGACG-GGAAcGAcgUCGGCGCc -3'
miRNA:   3'- uuCUcGCGCUGCuUCUU-CU--AGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 106432 0.67 0.95909
Target:  5'- --uGGCGCuGuuGGAGAAGG-CGGUGCa -3'
miRNA:   3'- uucUCGCG-CugCUUCUUCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 105886 0.66 0.978534
Target:  5'- --uGGgGgGugGGAGAGGAgucgccgcggcggCGGCGCu -3'
miRNA:   3'- uucUCgCgCugCUUCUUCUa------------GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 105840 0.7 0.873836
Target:  5'- -cGAGCGgGACcGAGggGAauggacgacgugagCGGCGCc -3'
miRNA:   3'- uuCUCGCgCUGcUUCuuCUa-------------GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 102449 0.74 0.69057
Target:  5'- -cGAGC-UGACGcucGAGGAGAUgCGGCGCg -3'
miRNA:   3'- uuCUCGcGCUGC---UUCUUCUA-GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 102181 0.69 0.911035
Target:  5'- uGGcGCGCGGCGAGGAccuGG-CGGcCGCc -3'
miRNA:   3'- uUCuCGCGCUGCUUCUu--CUaGCC-GCG- -5'
10701 3' -53.9 NC_002794.1 + 101793 0.67 0.947146
Target:  5'- -cGAGUGCuGCGccGcuGGUUGGCGCa -3'
miRNA:   3'- uuCUCGCGcUGCuuCuuCUAGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 101687 0.66 0.975645
Target:  5'- cGGAGCGCGAgcccgagccggcgccCGAGGAcGuguucgUGGUGCa -3'
miRNA:   3'- uUCUCGCGCU---------------GCUUCUuCua----GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 101432 0.74 0.639609
Target:  5'- ---uGCGCGACGAuccGggGAcgcCGGCGCg -3'
miRNA:   3'- uucuCGCGCUGCUu--CuuCUa--GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 101283 0.67 0.956865
Target:  5'- --uGGCgGCGGCGggGAGGAgacgacguaccagGGCGCc -3'
miRNA:   3'- uucUCG-CGCUGCuuCUUCUag-----------CCGCG- -5'
10701 3' -53.9 NC_002794.1 + 100222 0.75 0.629366
Target:  5'- -cGAGgGCGuCGAGGucuucGAGGUCGGCGUc -3'
miRNA:   3'- uuCUCgCGCuGCUUC-----UUCUAGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 99590 0.72 0.759605
Target:  5'- gGAGGGCGCGGCGgcGgcGcgCGcucGCGCc -3'
miRNA:   3'- -UUCUCGCGCUGCuuCuuCuaGC---CGCG- -5'
10701 3' -53.9 NC_002794.1 + 98933 0.7 0.881
Target:  5'- -uGGGCGCGGCcGGGAAGGggcuggggcucgugcUgGGCGCc -3'
miRNA:   3'- uuCUCGCGCUGcUUCUUCU---------------AgCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 95815 0.76 0.548118
Target:  5'- gGGGAGCgGCGGCGGccGGggGAgCGGCGg -3'
miRNA:   3'- -UUCUCG-CGCUGCU--UCuuCUaGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 95763 0.66 0.968734
Target:  5'- cGGGGCggcggccGCGACGGcggccggggcgAGAGGcgCGGCGg -3'
miRNA:   3'- uUCUCG-------CGCUGCU-----------UCUUCuaGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 94420 0.68 0.927944
Target:  5'- uGGGGCGCGccCGAcaaccuGGAGGccuaCGGCGCg -3'
miRNA:   3'- uUCUCGCGCu-GCU------UCUUCua--GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 94122 0.7 0.863445
Target:  5'- -cGAGUGCGuCGuguuGGAAGGUCcgaccgcggcGGCGCu -3'
miRNA:   3'- uuCUCGCGCuGCu---UCUUCUAG----------CCGCG- -5'
10701 3' -53.9 NC_002794.1 + 94044 0.72 0.750008
Target:  5'- cGAGAGCgGCGGCGGugcGggGG-CGGCGg -3'
miRNA:   3'- -UUCUCG-CGCUGCUu--CuuCUaGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 92549 0.66 0.971928
Target:  5'- ----cCGCGACGAGGu-GGcCGGCGCc -3'
miRNA:   3'- uucucGCGCUGCUUCuuCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 92314 0.69 0.883106
Target:  5'- -uGGGCGCgGGCGgcGggGGcccgggcgggcggcUCGGCGUc -3'
miRNA:   3'- uuCUCGCG-CUGCuuCuuCU--------------AGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.