miRNA display CGI


Results 101 - 120 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10701 3' -53.9 NC_002794.1 + 92272 0.69 0.898577
Target:  5'- --cGGCGCcgGGCGAGGcgcgcAAGGUCGGCGa -3'
miRNA:   3'- uucUCGCG--CUGCUUC-----UUCUAGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 91130 0.68 0.922547
Target:  5'- ---cGUGCGugGAGGAGGcgCGGaCGg -3'
miRNA:   3'- uucuCGCGCugCUUCUUCuaGCC-GCg -5'
10701 3' -53.9 NC_002794.1 + 89666 0.68 0.942702
Target:  5'- aAGGAaacGCGCGGCGGuGGGAGGgcuguucgCGGCGa -3'
miRNA:   3'- -UUCU---CGCGCUGCU-UCUUCUa-------GCCGCg -5'
10701 3' -53.9 NC_002794.1 + 89546 0.68 0.927944
Target:  5'- cAGA-CGCGACGGAGGAGcGUCGuGCcgaGCg -3'
miRNA:   3'- uUCUcGCGCUGCUUCUUC-UAGC-CG---CG- -5'
10701 3' -53.9 NC_002794.1 + 89334 0.67 0.951357
Target:  5'- gGGGAcGCgGCGGCGAGaccuccGAGGAcUCGGUGUg -3'
miRNA:   3'- -UUCU-CG-CGCUGCUU------CUUCU-AGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 86977 0.69 0.904924
Target:  5'- -cGAGCuGCGACGAGGuccGGcggcuuUCGGCGg -3'
miRNA:   3'- uuCUCG-CGCUGCUUCu--UCu-----AGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 86820 0.68 0.942702
Target:  5'- cAGGGcCGCGACcucgccGGGAucGGGUCGGCGg -3'
miRNA:   3'- uUCUC-GCGCUGc-----UUCU--UCUAGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 84284 0.66 0.979438
Target:  5'- --cAGCuGcCGACGggGAGcGG-CGGCGCu -3'
miRNA:   3'- uucUCG-C-GCUGCuuCUU-CUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 83878 0.7 0.847893
Target:  5'- --cGGCGCGACGGccccGGGcUCGGCGCc -3'
miRNA:   3'- uucUCGCGCUGCUuc--UUCuAGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 79427 0.72 0.778451
Target:  5'- cAAGGGCccggcgGCGGCGgcGgcGAcCGGCGCg -3'
miRNA:   3'- -UUCUCG------CGCUGCuuCuuCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 78328 0.69 0.904924
Target:  5'- --cGGCGCGACGGgcGGAGGcgccggaauGUCGGCcaGCa -3'
miRNA:   3'- uucUCGCGCUGCU--UCUUC---------UAGCCG--CG- -5'
10701 3' -53.9 NC_002794.1 + 72432 0.73 0.700651
Target:  5'- gAGGAGC-CGGCGGAG-GGAccggCGGCGCc -3'
miRNA:   3'- -UUCUCGcGCUGCUUCuUCUa---GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 72008 0.67 0.947146
Target:  5'- cGGAGCuCGAgGAAGccGAGGUC-GCGCa -3'
miRNA:   3'- uUCUCGcGCUgCUUC--UUCUAGcCGCG- -5'
10701 3' -53.9 NC_002794.1 + 71807 0.71 0.795869
Target:  5'- -cGGGCGCGGCGAGgccgccucgucgcGAGGAUCGcCGUc -3'
miRNA:   3'- uuCUCGCGCUGCUU-------------CUUCUAGCcGCG- -5'
10701 3' -53.9 NC_002794.1 + 71321 0.66 0.979438
Target:  5'- -cGAGCGCGccaccucgGCGgcGAugucguccgccAGG-CGGCGCa -3'
miRNA:   3'- uuCUCGCGC--------UGCuuCU-----------UCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 69374 0.77 0.515479
Target:  5'- -cGGGCGCGACGAagcgaacagaaacaGGAAGAgcggccaGGCGCc -3'
miRNA:   3'- uuCUCGCGCUGCU--------------UCUUCUag-----CCGCG- -5'
10701 3' -53.9 NC_002794.1 + 66856 0.71 0.823114
Target:  5'- --cGGCGCGGCGAGGccg--CGGCGUg -3'
miRNA:   3'- uucUCGCGCUGCUUCuucuaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 66514 0.66 0.969924
Target:  5'- -cGAGCGauaGGCcguccccggguccgcGAAGGUCGGCGCc -3'
miRNA:   3'- uuCUCGCg--CUGcuu------------CUUCUAGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 64827 0.67 0.962621
Target:  5'- cGAGccGGCGcCGACGAcc-GGA-CGGCGCg -3'
miRNA:   3'- -UUC--UCGC-GCUGCUucuUCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 62488 0.72 0.787681
Target:  5'- -cGAGCGCGAgUGGAcGgcGggCGGCGCc -3'
miRNA:   3'- uuCUCGCGCU-GCUU-CuuCuaGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.