miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10701 3' -53.9 NC_002794.1 + 120125 0.66 0.979438
Target:  5'- ---cGCGCGACGgcGAccggggacGGGcCGGUGCc -3'
miRNA:   3'- uucuCGCGCUGCuuCU--------UCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 84284 0.66 0.979438
Target:  5'- --cAGCuGcCGACGggGAGcGG-CGGCGCu -3'
miRNA:   3'- uucUCG-C-GCUGCuuCUU-CUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 125448 0.66 0.979438
Target:  5'- cAAGGGCGaCGGCGgcGAGca-CGGcCGCg -3'
miRNA:   3'- -UUCUCGC-GCUGCuuCUUcuaGCC-GCG- -5'
10701 3' -53.9 NC_002794.1 + 20030 0.66 0.979438
Target:  5'- cGAGAGCGCGGucCGGAucgcgcucGAccAGAUC-GCGCu -3'
miRNA:   3'- -UUCUCGCGCU--GCUU--------CU--UCUAGcCGCG- -5'
10701 3' -53.9 NC_002794.1 + 44362 0.66 0.979438
Target:  5'- cGAGAGCGCGGCG---------GGCGCg -3'
miRNA:   3'- -UUCUCGCGCUGCuucuucuagCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 55318 0.66 0.974622
Target:  5'- -cGGGCGCGGgcggcuucCGAGGAcccgGGGUC-GCGCc -3'
miRNA:   3'- uuCUCGCGCU--------GCUUCU----UCUAGcCGCG- -5'
10701 3' -53.9 NC_002794.1 + 140240 0.66 0.974622
Target:  5'- aGAGAGCGgGGaaaGAAGggGAaagaaggagagcUCGcCGCg -3'
miRNA:   3'- -UUCUCGCgCUg--CUUCuuCU------------AGCcGCG- -5'
10701 3' -53.9 NC_002794.1 + 148132 0.67 0.962621
Target:  5'- -cGGGCGCGGggccgcCGggGcGAGggCGGuCGCg -3'
miRNA:   3'- uuCUCGCGCU------GCuuC-UUCuaGCC-GCG- -5'
10701 3' -53.9 NC_002794.1 + 115719 0.67 0.962621
Target:  5'- cAGGAGCcacuggGCGGuCGggGGgcccuggaucAGGUaCGGCGCg -3'
miRNA:   3'- -UUCUCG------CGCU-GCuuCU----------UCUA-GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 116001 0.67 0.962621
Target:  5'- gGAGAcCGCGgagaccGCGguGgcGAUUGGCGCg -3'
miRNA:   3'- -UUCUcGCGC------UGCuuCuuCUAGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 121991 0.66 0.965934
Target:  5'- -cGAGCGCGGCcGGGAGcuguuccacgucGucuucuUCGGCGCc -3'
miRNA:   3'- uuCUCGCGCUGcUUCUU------------Cu-----AGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 36885 0.66 0.965934
Target:  5'- cAGGuAGCGCGugcagaGCGuccAGAGGucgCGGCGCc -3'
miRNA:   3'- -UUC-UCGCGC------UGCu--UCUUCua-GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 138596 0.66 0.965934
Target:  5'- --cGGCGCGGCGGAGAg---CGGCu- -3'
miRNA:   3'- uucUCGCGCUGCUUCUucuaGCCGcg -5'
10701 3' -53.9 NC_002794.1 + 32005 0.66 0.965934
Target:  5'- -cGAGC-CGACGcAGAccaggcaggGGAcgCGGCGCu -3'
miRNA:   3'- uuCUCGcGCUGCuUCU---------UCUa-GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 95763 0.66 0.968734
Target:  5'- cGGGGCggcggccGCGACGGcggccggggcgAGAGGcgCGGCGg -3'
miRNA:   3'- uUCUCG-------CGCUGCU-----------UCUUCuaGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 66514 0.66 0.969924
Target:  5'- -cGAGCGauaGGCcguccccggguccgcGAAGGUCGGCGCc -3'
miRNA:   3'- uuCUCGCg--CUGcuu------------CUUCUAGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 142297 0.66 0.969034
Target:  5'- uAGGAGgcgguacagGUGGCGGAGgcGG-CGGCGCa -3'
miRNA:   3'- -UUCUCg--------CGCUGCUUCuuCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 2476 0.66 0.971928
Target:  5'- --aAGCGCG-CGAGGgcGAUcCGGUGg -3'
miRNA:   3'- uucUCGCGCuGCUUCuuCUA-GCCGCg -5'
10701 3' -53.9 NC_002794.1 + 107630 0.66 0.971928
Target:  5'- --uGGCgGUGACGAAGAGGA---GCGCg -3'
miRNA:   3'- uucUCG-CGCUGCUUCUUCUagcCGCG- -5'
10701 3' -53.9 NC_002794.1 + 92549 0.66 0.971928
Target:  5'- ----cCGCGACGAGGu-GGcCGGCGCc -3'
miRNA:   3'- uucucGCGCUGCUUCuuCUaGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.