Results 81 - 100 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10701 | 3' | -53.9 | NC_002794.1 | + | 146935 | 0.67 | 0.951357 |
Target: 5'- gGAGAGCGCucggucuGGCGuggcucucucuucauGGAccgccugucgcgAGGUCGGCGCc -3' miRNA: 3'- -UUCUCGCG-------CUGCu--------------UCU------------UCUAGCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 54456 | 0.67 | 0.951357 |
Target: 5'- cAGGGCGCGAcCGGAcaccuuGggGAUgaUGGCGg -3' miRNA: 3'- uUCUCGCGCU-GCUU------CuuCUA--GCCGCg -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 89334 | 0.67 | 0.951357 |
Target: 5'- gGGGAcGCgGCGGCGAGaccuccGAGGAcUCGGUGUg -3' miRNA: 3'- -UUCU-CG-CGCUGCUU------CUUCU-AGCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 111307 | 0.67 | 0.951357 |
Target: 5'- --cAGCcCGACGGAGAcgccGGGccagCGGCGCg -3' miRNA: 3'- uucUCGcGCUGCUUCU----UCUa---GCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 21629 | 0.67 | 0.951357 |
Target: 5'- cGGGAG-GaCGACGAGGAAGAagacgaagaagCGGCGg -3' miRNA: 3'- -UUCUCgC-GCUGCUUCUUCUa----------GCCGCg -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 1981 | 0.67 | 0.947146 |
Target: 5'- cGGGGGCGUGuuccucacaaaaAUGAGGAAGuccgaGGCGCc -3' miRNA: 3'- -UUCUCGCGC------------UGCUUCUUCuag--CCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 101793 | 0.67 | 0.947146 |
Target: 5'- -cGAGUGCuGCGccGcuGGUUGGCGCa -3' miRNA: 3'- uuCUCGCGcUGCuuCuuCUAGCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 121153 | 0.67 | 0.955337 |
Target: 5'- -cGAG-GCuGCGAAGGcguucAGAUCGGCaGCg -3' miRNA: 3'- uuCUCgCGcUGCUUCU-----UCUAGCCG-CG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 106432 | 0.67 | 0.95909 |
Target: 5'- --uGGCGCuGuuGGAGAAGG-CGGUGCa -3' miRNA: 3'- uucUCGCG-CugCUUCUUCUaGCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 101283 | 0.67 | 0.956865 |
Target: 5'- --uGGCgGCGGCGggGAGGAgacgacguaccagGGCGCc -3' miRNA: 3'- uucUCG-CGCUGCuuCUUCUag-----------CCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 116001 | 0.67 | 0.962621 |
Target: 5'- gGAGAcCGCGgagaccGCGguGgcGAUUGGCGCg -3' miRNA: 3'- -UUCUcGCGC------UGCuuCuuCUAGCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 115719 | 0.67 | 0.962621 |
Target: 5'- cAGGAGCcacuggGCGGuCGggGGgcccuggaucAGGUaCGGCGCg -3' miRNA: 3'- -UUCUCG------CGCU-GCuuCU----------UCUA-GCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 148132 | 0.67 | 0.962621 |
Target: 5'- -cGGGCGCGGggccgcCGggGcGAGggCGGuCGCg -3' miRNA: 3'- uuCUCGCGCU------GCuuC-UUCuaGCC-GCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 51058 | 0.67 | 0.962621 |
Target: 5'- cGAGAcgGCgGCGACGgcGAccuccgAGcgUGGCGCg -3' miRNA: 3'- -UUCU--CG-CGCUGCuuCU------UCuaGCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 64827 | 0.67 | 0.962621 |
Target: 5'- cGAGccGGCGcCGACGAcc-GGA-CGGCGCg -3' miRNA: 3'- -UUC--UCGC-GCUGCUucuUCUaGCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 113672 | 0.67 | 0.95909 |
Target: 5'- --cAGCGCGGCGAGcAGGcccgccaccGUCGGCaGCg -3' miRNA: 3'- uucUCGCGCUGCUUcUUC---------UAGCCG-CG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 17497 | 0.67 | 0.962621 |
Target: 5'- -cGAuCGcCGACGccGGccgAGAUCGGCGCc -3' miRNA: 3'- uuCUcGC-GCUGCuuCU---UCUAGCCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 190986 | 0.67 | 0.95909 |
Target: 5'- cAGGcAGCGCGGCGAcGGcgucgcGAUCGGcCGUu -3' miRNA: 3'- -UUC-UCGCGCUGCUuCUu-----CUAGCC-GCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 131720 | 0.67 | 0.955337 |
Target: 5'- cGAGAGCgaGCGAgCGGGcGAGAUC-GCGCu -3' miRNA: 3'- -UUCUCG--CGCU-GCUUcUUCUAGcCGCG- -5' |
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10701 | 3' | -53.9 | NC_002794.1 | + | 37732 | 0.67 | 0.955337 |
Target: 5'- -cGAGCgGCGGCGccGccGGcggCGGCGCg -3' miRNA: 3'- uuCUCG-CGCUGCuuCuuCUa--GCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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