miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10701 3' -53.9 NC_002794.1 + 142297 0.66 0.969034
Target:  5'- uAGGAGgcgguacagGUGGCGGAGgcGG-CGGCGCa -3'
miRNA:   3'- -UUCUCg--------CGCUGCUUCuuCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 95763 0.66 0.968734
Target:  5'- cGGGGCggcggccGCGACGGcggccggggcgAGAGGcgCGGCGg -3'
miRNA:   3'- uUCUCG-------CGCUGCU-----------UCUUCuaGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 32005 0.66 0.965934
Target:  5'- -cGAGC-CGACGcAGAccaggcaggGGAcgCGGCGCu -3'
miRNA:   3'- uuCUCGcGCUGCuUCU---------UCUa-GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 138596 0.66 0.965934
Target:  5'- --cGGCGCGGCGGAGAg---CGGCu- -3'
miRNA:   3'- uucUCGCGCUGCUUCUucuaGCCGcg -5'
10701 3' -53.9 NC_002794.1 + 36885 0.66 0.965934
Target:  5'- cAGGuAGCGCGugcagaGCGuccAGAGGucgCGGCGCc -3'
miRNA:   3'- -UUC-UCGCGC------UGCu--UCUUCua-GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 121991 0.66 0.965934
Target:  5'- -cGAGCGCGGCcGGGAGcuguuccacgucGucuucuUCGGCGCc -3'
miRNA:   3'- uuCUCGCGCUGcUUCUU------------Cu-----AGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 17497 0.67 0.962621
Target:  5'- -cGAuCGcCGACGccGGccgAGAUCGGCGCc -3'
miRNA:   3'- uuCUcGC-GCUGCuuCU---UCUAGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 64827 0.67 0.962621
Target:  5'- cGAGccGGCGcCGACGAcc-GGA-CGGCGCg -3'
miRNA:   3'- -UUC--UCGC-GCUGCUucuUCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 51058 0.67 0.962621
Target:  5'- cGAGAcgGCgGCGACGgcGAccuccgAGcgUGGCGCg -3'
miRNA:   3'- -UUCU--CG-CGCUGCuuCU------UCuaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 148132 0.67 0.962621
Target:  5'- -cGGGCGCGGggccgcCGggGcGAGggCGGuCGCg -3'
miRNA:   3'- uuCUCGCGCU------GCuuC-UUCuaGCC-GCG- -5'
10701 3' -53.9 NC_002794.1 + 115719 0.67 0.962621
Target:  5'- cAGGAGCcacuggGCGGuCGggGGgcccuggaucAGGUaCGGCGCg -3'
miRNA:   3'- -UUCUCG------CGCU-GCuuCU----------UCUA-GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 116001 0.67 0.962621
Target:  5'- gGAGAcCGCGgagaccGCGguGgcGAUUGGCGCg -3'
miRNA:   3'- -UUCUcGCGC------UGCuuCuuCUAGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 113672 0.67 0.95909
Target:  5'- --cAGCGCGGCGAGcAGGcccgccaccGUCGGCaGCg -3'
miRNA:   3'- uucUCGCGCUGCUUcUUC---------UAGCCG-CG- -5'
10701 3' -53.9 NC_002794.1 + 190986 0.67 0.95909
Target:  5'- cAGGcAGCGCGGCGAcGGcgucgcGAUCGGcCGUu -3'
miRNA:   3'- -UUC-UCGCGCUGCUuCUu-----CUAGCC-GCG- -5'
10701 3' -53.9 NC_002794.1 + 106432 0.67 0.95909
Target:  5'- --uGGCGCuGuuGGAGAAGG-CGGUGCa -3'
miRNA:   3'- uucUCGCG-CugCUUCUUCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 101283 0.67 0.956865
Target:  5'- --uGGCgGCGGCGggGAGGAgacgacguaccagGGCGCc -3'
miRNA:   3'- uucUCG-CGCUGCuuCUUCUag-----------CCGCG- -5'
10701 3' -53.9 NC_002794.1 + 23968 0.67 0.955337
Target:  5'- -cGAGCcaGCGGCGAGGc----CGGCGCc -3'
miRNA:   3'- uuCUCG--CGCUGCUUCuucuaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 121153 0.67 0.955337
Target:  5'- -cGAG-GCuGCGAAGGcguucAGAUCGGCaGCg -3'
miRNA:   3'- uuCUCgCGcUGCUUCU-----UCUAGCCG-CG- -5'
10701 3' -53.9 NC_002794.1 + 37732 0.67 0.955337
Target:  5'- -cGAGCgGCGGCGccGccGGcggCGGCGCg -3'
miRNA:   3'- uuCUCG-CGCUGCuuCuuCUa--GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 131720 0.67 0.955337
Target:  5'- cGAGAGCgaGCGAgCGGGcGAGAUC-GCGCu -3'
miRNA:   3'- -UUCUCG--CGCU-GCUUcUUCUAGcCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.