miRNA display CGI


Results 21 - 40 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10701 5' -57.6 NC_002794.1 + 99600 0.67 0.864047
Target:  5'- gCGGCGGCGCG---CGCUCG-CgccgcCUCGg -3'
miRNA:   3'- -GCUGCCGCGCcaaGCGAGCaGa----GAGC- -5'
10701 5' -57.6 NC_002794.1 + 96421 0.68 0.841548
Target:  5'- uCGAucuCGGCGCGG--CGCUCGaUCUCa-- -3'
miRNA:   3'- -GCU---GCCGCGCCaaGCGAGC-AGAGagc -5'
10701 5' -57.6 NC_002794.1 + 95234 0.66 0.926019
Target:  5'- aGACGGU-UGGUUCGCggcccCGUUUgUCGa -3'
miRNA:   3'- gCUGCCGcGCCAAGCGa----GCAGAgAGC- -5'
10701 5' -57.6 NC_002794.1 + 91230 0.68 0.817484
Target:  5'- gGACGGCGCGGcg-GC-CGUCgggcugcgCUCGc -3'
miRNA:   3'- gCUGCCGCGCCaagCGaGCAGa-------GAGC- -5'
10701 5' -57.6 NC_002794.1 + 89275 0.71 0.709417
Target:  5'- uCGACGGUGUGGacgaucgugUCGCUCuccGUCcgaUCUCGg -3'
miRNA:   3'- -GCUGCCGCGCCa--------AGCGAG---CAG---AGAGC- -5'
10701 5' -57.6 NC_002794.1 + 88939 0.71 0.670787
Target:  5'- gCGAUGGCGCGGUguaacUCGCUCGguaCgagCGu -3'
miRNA:   3'- -GCUGCCGCGCCA-----AGCGAGCagaGa--GC- -5'
10701 5' -57.6 NC_002794.1 + 82047 0.69 0.765398
Target:  5'- gCGGCGGCgGCGGcggCG-UCGUC-CUCGg -3'
miRNA:   3'- -GCUGCCG-CGCCaa-GCgAGCAGaGAGC- -5'
10701 5' -57.6 NC_002794.1 + 78443 0.74 0.516036
Target:  5'- gCGGCGGaCGCGGacgCGCUCGcggUCUCGg -3'
miRNA:   3'- -GCUGCC-GCGCCaa-GCGAGCag-AGAGC- -5'
10701 5' -57.6 NC_002794.1 + 70341 0.69 0.792034
Target:  5'- cCGACGGC-CGGgcgccCGCUCGUCcgcccacccgCUCGc -3'
miRNA:   3'- -GCUGCCGcGCCaa---GCGAGCAGa---------GAGC- -5'
10701 5' -57.6 NC_002794.1 + 67960 0.66 0.920783
Target:  5'- gGACGGCGggcccagaCGGgUCGgUCGcUUCUCGa -3'
miRNA:   3'- gCUGCCGC--------GCCaAGCgAGCaGAGAGC- -5'
10701 5' -57.6 NC_002794.1 + 66018 0.72 0.61212
Target:  5'- aGGCGGcCGCGGUcgUCGC-CGUCgUCgUCGg -3'
miRNA:   3'- gCUGCC-GCGCCA--AGCGaGCAG-AG-AGC- -5'
10701 5' -57.6 NC_002794.1 + 65272 0.66 0.909654
Target:  5'- gCGGCGGCGCcuccUCGCcccccucggcgUCGUC-CUCGa -3'
miRNA:   3'- -GCUGCCGCGcca-AGCG-----------AGCAGaGAGC- -5'
10701 5' -57.6 NC_002794.1 + 63323 0.72 0.651268
Target:  5'- cCGGCGgggggcccgaGCGCGGaccggUCGCUCGccCUCUCGc -3'
miRNA:   3'- -GCUGC----------CGCGCCa----AGCGAGCa-GAGAGC- -5'
10701 5' -57.6 NC_002794.1 + 61896 0.66 0.920247
Target:  5'- gCGGCGaGCGCGGcgagCGCagcgacgUCGUCaccCUCGa -3'
miRNA:   3'- -GCUGC-CGCGCCaa--GCG-------AGCAGa--GAGC- -5'
10701 5' -57.6 NC_002794.1 + 38499 0.66 0.926019
Target:  5'- gCGGCGGCGcCGGUcgcCGC-CGcCUCcgCGa -3'
miRNA:   3'- -GCUGCCGC-GCCAa--GCGaGCaGAGa-GC- -5'
10701 5' -57.6 NC_002794.1 + 37750 0.7 0.741516
Target:  5'- gCGGCGGCGCGGcggCGCcggcgggagcggccgUCGUCg-UCGg -3'
miRNA:   3'- -GCUGCCGCGCCaa-GCG---------------AGCAGagAGC- -5'
10701 5' -57.6 NC_002794.1 + 35764 0.68 0.841548
Target:  5'- aCGACGuCGCGGcaccgUCGCcggcgUCGUCUC-CGg -3'
miRNA:   3'- -GCUGCcGCGCCa----AGCG-----AGCAGAGaGC- -5'
10701 5' -57.6 NC_002794.1 + 30990 0.66 0.920783
Target:  5'- gCGACGGCGgGGUcuUCGCcggaCGUCgccgccgcCUCc -3'
miRNA:   3'- -GCUGCCGCgCCA--AGCGa---GCAGa-------GAGc -5'
10701 5' -57.6 NC_002794.1 + 21933 0.76 0.418148
Target:  5'- gCGGCGGCGCGG--CGCUCGUCgaaggCcgUCGg -3'
miRNA:   3'- -GCUGCCGCGCCaaGCGAGCAGa----G--AGC- -5'
10701 5' -57.6 NC_002794.1 + 21669 0.68 0.841548
Target:  5'- uGGCGGCgGCGGUauUCGCcCG-CUC-CGg -3'
miRNA:   3'- gCUGCCG-CGCCA--AGCGaGCaGAGaGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.