miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10701 5' -57.6 NC_002794.1 + 96421 0.68 0.841548
Target:  5'- uCGAucuCGGCGCGG--CGCUCGaUCUCa-- -3'
miRNA:   3'- -GCU---GCCGCGCCaaGCGAGC-AGAGagc -5'
10701 5' -57.6 NC_002794.1 + 35764 0.68 0.841548
Target:  5'- aCGACGuCGCGGcaccgUCGCcggcgUCGUCUC-CGg -3'
miRNA:   3'- -GCUGCcGCGCCa----AGCG-----AGCAGAGaGC- -5'
10701 5' -57.6 NC_002794.1 + 91230 0.68 0.817484
Target:  5'- gGACGGCGCGGcg-GC-CGUCgggcugcgCUCGc -3'
miRNA:   3'- gCUGCCGCGCCaagCGaGCAGa-------GAGC- -5'
10701 5' -57.6 NC_002794.1 + 4266 0.69 0.792034
Target:  5'- uCGAuCGGUGaCGGUggucuuucUCGCUCGguggugguuuuUCUCUCGc -3'
miRNA:   3'- -GCU-GCCGC-GCCA--------AGCGAGC-----------AGAGAGC- -5'
10701 5' -57.6 NC_002794.1 + 121586 0.69 0.792034
Target:  5'- uGACgGGCGCGGggUCGUUCGgcgacgaUUUCGa -3'
miRNA:   3'- gCUG-CCGCGCCa-AGCGAGCag-----AGAGC- -5'
10701 5' -57.6 NC_002794.1 + 70341 0.69 0.792034
Target:  5'- cCGACGGC-CGGgcgccCGCUCGUCcgcccacccgCUCGc -3'
miRNA:   3'- -GCUGCCGcGCCaa---GCGAGCAGa---------GAGC- -5'
10701 5' -57.6 NC_002794.1 + 82047 0.69 0.765398
Target:  5'- gCGGCGGCgGCGGcggCG-UCGUC-CUCGg -3'
miRNA:   3'- -GCUGCCG-CGCCaa-GCgAGCAGaGAGC- -5'
10701 5' -57.6 NC_002794.1 + 134127 0.69 0.765398
Target:  5'- cCGACGGCGCGGcgaGCgCGgaagCUCGg -3'
miRNA:   3'- -GCUGCCGCGCCaagCGaGCaga-GAGC- -5'
10701 5' -57.6 NC_002794.1 + 185401 0.7 0.756292
Target:  5'- aCGAgGGCGCGGgcccgacCGC-CGUCgaCUCGa -3'
miRNA:   3'- -GCUgCCGCGCCaa-----GCGaGCAGa-GAGC- -5'
10701 5' -57.6 NC_002794.1 + 117707 0.7 0.747085
Target:  5'- gCGACGGCGUGGca-GCUccgCGUCUgCUCc -3'
miRNA:   3'- -GCUGCCGCGCCaagCGA---GCAGA-GAGc -5'
10701 5' -57.6 NC_002794.1 + 10604 0.7 0.747085
Target:  5'- gGACGGUaaGCGGUUaGCUCGUCg-UCa -3'
miRNA:   3'- gCUGCCG--CGCCAAgCGAGCAGagAGc -5'
10701 5' -57.6 NC_002794.1 + 122790 0.7 0.747085
Target:  5'- uCGACGGCGUGGagUUCGC-CGUCa---- -3'
miRNA:   3'- -GCUGCCGCGCC--AAGCGaGCAGagagc -5'
10701 5' -57.6 NC_002794.1 + 37750 0.7 0.741516
Target:  5'- gCGGCGGCGCGGcggCGCcggcgggagcggccgUCGUCg-UCGg -3'
miRNA:   3'- -GCUGCCGCGCCaa-GCG---------------AGCAGagAGC- -5'
10701 5' -57.6 NC_002794.1 + 15339 0.7 0.737786
Target:  5'- gGACGGCGUGGccagauggaaUCGCaCG-CUCUCGa -3'
miRNA:   3'- gCUGCCGCGCCa---------AGCGaGCaGAGAGC- -5'
10701 5' -57.6 NC_002794.1 + 89275 0.71 0.709417
Target:  5'- uCGACGGUGUGGacgaucgugUCGCUCuccGUCcgaUCUCGg -3'
miRNA:   3'- -GCUGCCGCGCCa--------AGCGAG---CAG---AGAGC- -5'
10701 5' -57.6 NC_002794.1 + 10836 0.71 0.680507
Target:  5'- aGACGGCGCcc--UGCUCGUCacgCUCGa -3'
miRNA:   3'- gCUGCCGCGccaaGCGAGCAGa--GAGC- -5'
10701 5' -57.6 NC_002794.1 + 88939 0.71 0.670787
Target:  5'- gCGAUGGCGCGGUguaacUCGCUCGguaCgagCGu -3'
miRNA:   3'- -GCUGCCGCGCCA-----AGCGAGCagaGa--GC- -5'
10701 5' -57.6 NC_002794.1 + 179125 0.71 0.661038
Target:  5'- gGGC-GCGCGGUcggUCGaUCGUCUCUCc -3'
miRNA:   3'- gCUGcCGCGCCA---AGCgAGCAGAGAGc -5'
10701 5' -57.6 NC_002794.1 + 63323 0.72 0.651268
Target:  5'- cCGGCGgggggcccgaGCGCGGaccggUCGCUCGccCUCUCGc -3'
miRNA:   3'- -GCUGC----------CGCGCCa----AGCGAGCa-GAGAGC- -5'
10701 5' -57.6 NC_002794.1 + 66018 0.72 0.61212
Target:  5'- aGGCGGcCGCGGUcgUCGC-CGUCgUCgUCGg -3'
miRNA:   3'- gCUGCC-GCGCCA--AGCGaGCAG-AG-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.