Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10702 | 3' | -53.3 | NC_002794.1 | + | 47334 | 0.66 | 0.989418 |
Target: 5'- --cCGgcucCCGCGGCgGCggccucCGGACGUUCGc -3' miRNA: 3'- uuaGCa---GGCGCUG-CGa-----GCUUGCAAGC- -5' |
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10702 | 3' | -53.3 | NC_002794.1 | + | 52781 | 0.66 | 0.986486 |
Target: 5'- --gCGggaUCGUGACGCUCGAGCcgcucgUCGg -3' miRNA: 3'- uuaGCa--GGCGCUGCGAGCUUGca----AGC- -5' |
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10702 | 3' | -53.3 | NC_002794.1 | + | 105380 | 0.66 | 0.988021 |
Target: 5'- ---gGUCCGaca-GCUCGAGCuGUUCGg -3' miRNA: 3'- uuagCAGGCgcugCGAGCUUG-CAAGC- -5' |
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10702 | 3' | -53.3 | NC_002794.1 | + | 128679 | 0.66 | 0.988021 |
Target: 5'- uAAUCG-CCGCGGCGgUcCGGAgGcUCGg -3' miRNA: 3'- -UUAGCaGGCGCUGCgA-GCUUgCaAGC- -5' |
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10702 | 3' | -53.3 | NC_002794.1 | + | 98972 | 0.66 | 0.986325 |
Target: 5'- --cCGUCgGCGGCGCcguggccUCGGugG-UCGg -3' miRNA: 3'- uuaGCAGgCGCUGCG-------AGCUugCaAGC- -5' |
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10702 | 3' | -53.3 | NC_002794.1 | + | 17449 | 0.66 | 0.982969 |
Target: 5'- -cUCGggcCCGCGACcgaGgUCGAAgGUUCGc -3' miRNA: 3'- uuAGCa--GGCGCUG---CgAGCUUgCAAGC- -5' |
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10702 | 3' | -53.3 | NC_002794.1 | + | 156847 | 0.66 | 0.982969 |
Target: 5'- gGGUCGgugCCGCGcguuccCGCUCGAgGCGccUUCGa -3' miRNA: 3'- -UUAGCa--GGCGCu-----GCGAGCU-UGC--AAGC- -5' |
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10702 | 3' | -53.3 | NC_002794.1 | + | 119506 | 0.66 | 0.982969 |
Target: 5'- gGGUCGUCgGCGGCGCg-GAGCcGgccgCGg -3' miRNA: 3'- -UUAGCAGgCGCUGCGagCUUG-Caa--GC- -5' |
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10702 | 3' | -53.3 | NC_002794.1 | + | 122015 | 0.66 | 0.982969 |
Target: 5'- cGUCGUCUucuuCGGCGC-CGGGCGUcUCGu -3' miRNA: 3'- uUAGCAGGc---GCUGCGaGCUUGCA-AGC- -5' |
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10702 | 3' | -53.3 | NC_002794.1 | + | 22597 | 0.66 | 0.98097 |
Target: 5'- -cUCGgcacggUCGgGACGCUCGAGcCGaUCGg -3' miRNA: 3'- uuAGCa-----GGCgCUGCGAGCUU-GCaAGC- -5' |
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10702 | 3' | -53.3 | NC_002794.1 | + | 190611 | 0.66 | 0.989418 |
Target: 5'- ---gGUCCGCGACaGC-CGcAgGUUCGa -3' miRNA: 3'- uuagCAGGCGCUG-CGaGCuUgCAAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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