miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10702 3' -53.3 NC_002794.1 + 68906 0.68 0.958254
Target:  5'- cGAUCGcgUCGCGGgGCUCGcGGCGUccUCGu -3'
miRNA:   3'- -UUAGCa-GGCGCUgCGAGC-UUGCA--AGC- -5'
10702 3' -53.3 NC_002794.1 + 70216 0.67 0.971196
Target:  5'- -cUCGcCCG-GACGgUCGGGCGggCGg -3'
miRNA:   3'- uuAGCaGGCgCUGCgAGCUUGCaaGC- -5'
10702 3' -53.3 NC_002794.1 + 81021 0.72 0.814087
Target:  5'- cAUCGUCCGC-ACGCUCGuGCGg--- -3'
miRNA:   3'- uUAGCAGGCGcUGCGAGCuUGCaagc -5'
10702 3' -53.3 NC_002794.1 + 88689 0.68 0.950482
Target:  5'- cGUCGcUCCGCGAUaCUCGAcCG-UCGg -3'
miRNA:   3'- uUAGC-AGGCGCUGcGAGCUuGCaAGC- -5'
10702 3' -53.3 NC_002794.1 + 98972 0.66 0.986325
Target:  5'- --cCGUCgGCGGCGCcguggccUCGGugG-UCGg -3'
miRNA:   3'- uuaGCAGgCGCUGCG-------AGCUugCaAGC- -5'
10702 3' -53.3 NC_002794.1 + 100386 0.68 0.950482
Target:  5'- --aCGUCCGCGGCGUggaCG-ACGUggCGu -3'
miRNA:   3'- uuaGCAGGCGCUGCGa--GCuUGCAa-GC- -5'
10702 3' -53.3 NC_002794.1 + 101634 0.77 0.579772
Target:  5'- -uUCGUCCGCGAgCGUgggCGGGCGggCGg -3'
miRNA:   3'- uuAGCAGGCGCU-GCGa--GCUUGCaaGC- -5'
10702 3' -53.3 NC_002794.1 + 101986 0.67 0.971196
Target:  5'- cGAUCGgCCGCGACauGCUCucGCGgaccUCGg -3'
miRNA:   3'- -UUAGCaGGCGCUG--CGAGcuUGCa---AGC- -5'
10702 3' -53.3 NC_002794.1 + 102444 0.67 0.9788
Target:  5'- --aUGUCCGagcuGACGCUCGAggagauGCGgcgcgUCGg -3'
miRNA:   3'- uuaGCAGGCg---CUGCGAGCU------UGCa----AGC- -5'
10702 3' -53.3 NC_002794.1 + 105380 0.66 0.988021
Target:  5'- ---gGUCCGaca-GCUCGAGCuGUUCGg -3'
miRNA:   3'- uuagCAGGCgcugCGAGCUUG-CAAGC- -5'
10702 3' -53.3 NC_002794.1 + 107796 0.68 0.95448
Target:  5'- --gCGUCCGCG-CGCauugCGAACGccUCGc -3'
miRNA:   3'- uuaGCAGGCGCuGCGa---GCUUGCa-AGC- -5'
10702 3' -53.3 NC_002794.1 + 108177 0.66 0.988021
Target:  5'- --aCG-CCGCGACGCgcggacugCGAGCGg--- -3'
miRNA:   3'- uuaGCaGGCGCUGCGa-------GCUUGCaagc -5'
10702 3' -53.3 NC_002794.1 + 110620 0.66 0.989418
Target:  5'- --gCGggagCCGCGGCGCcgCGGcgGCGgggUCGg -3'
miRNA:   3'- uuaGCa---GGCGCUGCGa-GCU--UGCa--AGC- -5'
10702 3' -53.3 NC_002794.1 + 115325 0.68 0.961808
Target:  5'- cGGUCG-CCGCGGCGUcCGGGcCGcUCGg -3'
miRNA:   3'- -UUAGCaGGCGCUGCGaGCUU-GCaAGC- -5'
10702 3' -53.3 NC_002794.1 + 115891 0.67 0.973921
Target:  5'- --gCGUCCGCGgaGCGCg-GGGgGUUCGu -3'
miRNA:   3'- uuaGCAGGCGC--UGCGagCUUgCAAGC- -5'
10702 3' -53.3 NC_002794.1 + 119506 0.66 0.982969
Target:  5'- gGGUCGUCgGCGGCGCg-GAGCcGgccgCGg -3'
miRNA:   3'- -UUAGCAGgCGCUGCGagCUUG-Caa--GC- -5'
10702 3' -53.3 NC_002794.1 + 122015 0.66 0.982969
Target:  5'- cGUCGUCUucuuCGGCGC-CGGGCGUcUCGu -3'
miRNA:   3'- uUAGCAGGc---GCUGCGaGCUUGCA-AGC- -5'
10702 3' -53.3 NC_002794.1 + 128679 0.66 0.988021
Target:  5'- uAAUCG-CCGCGGCGgUcCGGAgGcUCGg -3'
miRNA:   3'- -UUAGCaGGCGCUGCgA-GCUUgCaAGC- -5'
10702 3' -53.3 NC_002794.1 + 134123 0.69 0.932187
Target:  5'- --cCGUCCGaCGGCGCggCGAGCGcggaagcUCGg -3'
miRNA:   3'- uuaGCAGGC-GCUGCGa-GCUUGCa------AGC- -5'
10702 3' -53.3 NC_002794.1 + 136560 0.71 0.877373
Target:  5'- -cUCGUCuCGCaGGUGCUCGGGCGUcUCGa -3'
miRNA:   3'- uuAGCAG-GCG-CUGCGAGCUUGCA-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.