miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10702 3' -53.3 NC_002794.1 + 191773 1.06 0.011582
Target:  5'- gAAUCGUCCGCGACGCUCGAACGUUCGc -3'
miRNA:   3'- -UUAGCAGGCGCUGCGAGCUUGCAAGC- -5'
10702 3' -53.3 NC_002794.1 + 191495 0.67 0.971478
Target:  5'- cGAUCGUCCGCcaccgagaggugccaGCGC-CGGGCG-UCGg -3'
miRNA:   3'- -UUAGCAGGCGc--------------UGCGaGCUUGCaAGC- -5'
10702 3' -53.3 NC_002794.1 + 190611 0.66 0.989418
Target:  5'- ---gGUCCGCGACaGC-CGcAgGUUCGa -3'
miRNA:   3'- uuagCAGGCGCUG-CGaGCuUgCAAGC- -5'
10702 3' -53.3 NC_002794.1 + 179109 0.68 0.95448
Target:  5'- cGGUCGUCCGCGguccggGCGCgCGGuCGgUCGa -3'
miRNA:   3'- -UUAGCAGGCGC------UGCGaGCUuGCaAGC- -5'
10702 3' -53.3 NC_002794.1 + 175291 0.67 0.976208
Target:  5'- -uUCGgaaCGUGACGCUCGAgguaacccacgagACGgUCGa -3'
miRNA:   3'- uuAGCag-GCGCUGCGAGCU-------------UGCaAGC- -5'
10702 3' -53.3 NC_002794.1 + 156847 0.66 0.982969
Target:  5'- gGGUCGgugCCGCGcguuccCGCUCGAgGCGccUUCGa -3'
miRNA:   3'- -UUAGCa--GGCGCu-----GCGAGCU-UGC--AAGC- -5'
10702 3' -53.3 NC_002794.1 + 152915 0.68 0.961808
Target:  5'- cAUCGUCCGgauCGAgGCcCGGGCGUacaUCGa -3'
miRNA:   3'- uUAGCAGGC---GCUgCGaGCUUGCA---AGC- -5'
10702 3' -53.3 NC_002794.1 + 152631 0.76 0.640578
Target:  5'- -cUCGUCCuggGCGGCGUUCGAGCGgcgagacgUCGu -3'
miRNA:   3'- uuAGCAGG---CGCUGCGAGCUUGCa-------AGC- -5'
10702 3' -53.3 NC_002794.1 + 145784 0.7 0.904039
Target:  5'- gAGUCGUCCcCGGCcgGCUCGGACGa--- -3'
miRNA:   3'- -UUAGCAGGcGCUG--CGAGCUUGCaagc -5'
10702 3' -53.3 NC_002794.1 + 142411 0.66 0.988021
Target:  5'- --gCGUCgGCGGCGC-CGGGCGc--- -3'
miRNA:   3'- uuaGCAGgCGCUGCGaGCUUGCaagc -5'
10702 3' -53.3 NC_002794.1 + 138958 0.68 0.961808
Target:  5'- --gCGUgCUGCGACGCggCGGACGggUUGg -3'
miRNA:   3'- uuaGCA-GGCGCUGCGa-GCUUGCa-AGC- -5'
10702 3' -53.3 NC_002794.1 + 136560 0.71 0.877373
Target:  5'- -cUCGUCuCGCaGGUGCUCGGGCGUcUCGa -3'
miRNA:   3'- uuAGCAG-GCG-CUGCGAGCUUGCA-AGC- -5'
10702 3' -53.3 NC_002794.1 + 134123 0.69 0.932187
Target:  5'- --cCGUCCGaCGGCGCggCGAGCGcggaagcUCGg -3'
miRNA:   3'- uuaGCAGGC-GCUGCGa-GCUUGCa------AGC- -5'
10702 3' -53.3 NC_002794.1 + 128679 0.66 0.988021
Target:  5'- uAAUCG-CCGCGGCGgUcCGGAgGcUCGg -3'
miRNA:   3'- -UUAGCaGGCGCUGCgA-GCUUgCaAGC- -5'
10702 3' -53.3 NC_002794.1 + 122015 0.66 0.982969
Target:  5'- cGUCGUCUucuuCGGCGC-CGGGCGUcUCGu -3'
miRNA:   3'- uUAGCAGGc---GCUGCGaGCUUGCA-AGC- -5'
10702 3' -53.3 NC_002794.1 + 119506 0.66 0.982969
Target:  5'- gGGUCGUCgGCGGCGCg-GAGCcGgccgCGg -3'
miRNA:   3'- -UUAGCAGgCGCUGCGagCUUG-Caa--GC- -5'
10702 3' -53.3 NC_002794.1 + 115891 0.67 0.973921
Target:  5'- --gCGUCCGCGgaGCGCg-GGGgGUUCGu -3'
miRNA:   3'- uuaGCAGGCGC--UGCGagCUUgCAAGC- -5'
10702 3' -53.3 NC_002794.1 + 115325 0.68 0.961808
Target:  5'- cGGUCG-CCGCGGCGUcCGGGcCGcUCGg -3'
miRNA:   3'- -UUAGCaGGCGCUGCGaGCUU-GCaAGC- -5'
10702 3' -53.3 NC_002794.1 + 110620 0.66 0.989418
Target:  5'- --gCGggagCCGCGGCGCcgCGGcgGCGgggUCGg -3'
miRNA:   3'- uuaGCa---GGCGCUGCGa-GCU--UGCa--AGC- -5'
10702 3' -53.3 NC_002794.1 + 108177 0.66 0.988021
Target:  5'- --aCG-CCGCGACGCgcggacugCGAGCGg--- -3'
miRNA:   3'- uuaGCaGGCGCUGCGa-------GCUUGCaagc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.