miRNA display CGI


Results 21 - 40 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10702 3' -53.3 NC_002794.1 + 107796 0.68 0.95448
Target:  5'- --gCGUCCGCG-CGCauugCGAACGccUCGc -3'
miRNA:   3'- uuaGCAGGCGCuGCGa---GCUUGCa-AGC- -5'
10702 3' -53.3 NC_002794.1 + 105380 0.66 0.988021
Target:  5'- ---gGUCCGaca-GCUCGAGCuGUUCGg -3'
miRNA:   3'- uuagCAGGCgcugCGAGCUUG-CAAGC- -5'
10702 3' -53.3 NC_002794.1 + 102444 0.67 0.9788
Target:  5'- --aUGUCCGagcuGACGCUCGAggagauGCGgcgcgUCGg -3'
miRNA:   3'- uuaGCAGGCg---CUGCGAGCU------UGCa----AGC- -5'
10702 3' -53.3 NC_002794.1 + 101986 0.67 0.971196
Target:  5'- cGAUCGgCCGCGACauGCUCucGCGgaccUCGg -3'
miRNA:   3'- -UUAGCaGGCGCUG--CGAGcuUGCa---AGC- -5'
10702 3' -53.3 NC_002794.1 + 101634 0.77 0.579772
Target:  5'- -uUCGUCCGCGAgCGUgggCGGGCGggCGg -3'
miRNA:   3'- uuAGCAGGCGCU-GCGa--GCUUGCaaGC- -5'
10702 3' -53.3 NC_002794.1 + 100386 0.68 0.950482
Target:  5'- --aCGUCCGCGGCGUggaCG-ACGUggCGu -3'
miRNA:   3'- uuaGCAGGCGCUGCGa--GCuUGCAa-GC- -5'
10702 3' -53.3 NC_002794.1 + 98972 0.66 0.986325
Target:  5'- --cCGUCgGCGGCGCcguggccUCGGugG-UCGg -3'
miRNA:   3'- uuaGCAGgCGCUGCG-------AGCUugCaAGC- -5'
10702 3' -53.3 NC_002794.1 + 88689 0.68 0.950482
Target:  5'- cGUCGcUCCGCGAUaCUCGAcCG-UCGg -3'
miRNA:   3'- uUAGC-AGGCGCUGcGAGCUuGCaAGC- -5'
10702 3' -53.3 NC_002794.1 + 81021 0.72 0.814087
Target:  5'- cAUCGUCCGC-ACGCUCGuGCGg--- -3'
miRNA:   3'- uUAGCAGGCGcUGCGAGCuUGCaagc -5'
10702 3' -53.3 NC_002794.1 + 70216 0.67 0.971196
Target:  5'- -cUCGcCCG-GACGgUCGGGCGggCGg -3'
miRNA:   3'- uuAGCaGGCgCUGCgAGCUUGCaaGC- -5'
10702 3' -53.3 NC_002794.1 + 68906 0.68 0.958254
Target:  5'- cGAUCGcgUCGCGGgGCUCGcGGCGUccUCGu -3'
miRNA:   3'- -UUAGCa-GGCGCUgCGAGC-UUGCA--AGC- -5'
10702 3' -53.3 NC_002794.1 + 65166 0.67 0.977414
Target:  5'- --cCGUCCGUGGCGC-CGAgaccggcgggugccgGCGaggUCGg -3'
miRNA:   3'- uuaGCAGGCGCUGCGaGCU---------------UGCa--AGC- -5'
10702 3' -53.3 NC_002794.1 + 63510 0.74 0.750086
Target:  5'- cGUCGUCCGCGACGCcucccgcgCGAGCcgccUCGc -3'
miRNA:   3'- uUAGCAGGCGCUGCGa-------GCUUGca--AGC- -5'
10702 3' -53.3 NC_002794.1 + 61881 0.69 0.946256
Target:  5'- cGUCGUCgGCGcCGCgcggCGAGCGcggCGa -3'
miRNA:   3'- uUAGCAGgCGCuGCGa---GCUUGCaa-GC- -5'
10702 3' -53.3 NC_002794.1 + 60217 0.66 0.988021
Target:  5'- --aCGaCCGCGACGCcgcCGAGCGcgCc -3'
miRNA:   3'- uuaGCaGGCGCUGCGa--GCUUGCaaGc -5'
10702 3' -53.3 NC_002794.1 + 59220 0.69 0.937111
Target:  5'- -cUCGgCCGCGGCGCgCGAGCucUUCGc -3'
miRNA:   3'- uuAGCaGGCGCUGCGaGCUUGc-AAGC- -5'
10702 3' -53.3 NC_002794.1 + 52781 0.66 0.986486
Target:  5'- --gCGggaUCGUGACGCUCGAGCcgcucgUCGg -3'
miRNA:   3'- uuaGCa--GGCGCUGCGAGCUUGca----AGC- -5'
10702 3' -53.3 NC_002794.1 + 51105 0.72 0.847266
Target:  5'- --aCGaCCGCGccucGCGCUCGGACG-UCGa -3'
miRNA:   3'- uuaGCaGGCGC----UGCGAGCUUGCaAGC- -5'
10702 3' -53.3 NC_002794.1 + 50667 0.67 0.971196
Target:  5'- --gCGgCCGCGGCGCUCGccGCGaaUCGa -3'
miRNA:   3'- uuaGCaGGCGCUGCGAGCu-UGCa-AGC- -5'
10702 3' -53.3 NC_002794.1 + 47334 0.66 0.989418
Target:  5'- --cCGgcucCCGCGGCgGCggccucCGGACGUUCGc -3'
miRNA:   3'- uuaGCa---GGCGCUG-CGa-----GCUUGCAAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.