miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10702 3' -53.3 NC_002794.1 + 175291 0.67 0.976208
Target:  5'- -uUCGgaaCGUGACGCUCGAgguaacccacgagACGgUCGa -3'
miRNA:   3'- uuAGCag-GCGCUGCGAGCU-------------UGCaAGC- -5'
10702 3' -53.3 NC_002794.1 + 115891 0.67 0.973921
Target:  5'- --gCGUCCGCGgaGCGCg-GGGgGUUCGu -3'
miRNA:   3'- uuaGCAGGCGC--UGCGagCUUgCAAGC- -5'
10702 3' -53.3 NC_002794.1 + 191495 0.67 0.971478
Target:  5'- cGAUCGUCCGCcaccgagaggugccaGCGC-CGGGCG-UCGg -3'
miRNA:   3'- -UUAGCAGGCGc--------------UGCGaGCUUGCaAGC- -5'
10702 3' -53.3 NC_002794.1 + 101986 0.67 0.971196
Target:  5'- cGAUCGgCCGCGACauGCUCucGCGgaccUCGg -3'
miRNA:   3'- -UUAGCaGGCGCUG--CGAGcuUGCa---AGC- -5'
10702 3' -53.3 NC_002794.1 + 50667 0.67 0.971196
Target:  5'- --gCGgCCGCGGCGCUCGccGCGaaUCGa -3'
miRNA:   3'- uuaGCaGGCGCUGCGAGCu-UGCa-AGC- -5'
10702 3' -53.3 NC_002794.1 + 70216 0.67 0.971196
Target:  5'- -cUCGcCCG-GACGgUCGGGCGggCGg -3'
miRNA:   3'- uuAGCaGGCgCUGCgAGCUUGCaaGC- -5'
10702 3' -53.3 NC_002794.1 + 13953 0.68 0.961808
Target:  5'- -uUCGUgCGUGucgagcCGCUCGGagACGUUCGc -3'
miRNA:   3'- uuAGCAgGCGCu-----GCGAGCU--UGCAAGC- -5'
10702 3' -53.3 NC_002794.1 + 115325 0.68 0.961808
Target:  5'- cGGUCG-CCGCGGCGUcCGGGcCGcUCGg -3'
miRNA:   3'- -UUAGCaGGCGCUGCGaGCUU-GCaAGC- -5'
10702 3' -53.3 NC_002794.1 + 138958 0.68 0.961808
Target:  5'- --gCGUgCUGCGACGCggCGGACGggUUGg -3'
miRNA:   3'- uuaGCA-GGCGCUGCGa-GCUUGCa-AGC- -5'
10702 3' -53.3 NC_002794.1 + 152915 0.68 0.961808
Target:  5'- cAUCGUCCGgauCGAgGCcCGGGCGUacaUCGa -3'
miRNA:   3'- uUAGCAGGC---GCUgCGaGCUUGCA---AGC- -5'
10702 3' -53.3 NC_002794.1 + 13122 0.68 0.961808
Target:  5'- gGGUCG-CCGCGcggcuCGCUCGcGCGggUCGu -3'
miRNA:   3'- -UUAGCaGGCGCu----GCGAGCuUGCa-AGC- -5'
10702 3' -53.3 NC_002794.1 + 68906 0.68 0.958254
Target:  5'- cGAUCGcgUCGCGGgGCUCGcGGCGUccUCGu -3'
miRNA:   3'- -UUAGCa-GGCGCUgCGAGC-UUGCA--AGC- -5'
10702 3' -53.3 NC_002794.1 + 107796 0.68 0.95448
Target:  5'- --gCGUCCGCG-CGCauugCGAACGccUCGc -3'
miRNA:   3'- uuaGCAGGCGCuGCGa---GCUUGCa-AGC- -5'
10702 3' -53.3 NC_002794.1 + 179109 0.68 0.95448
Target:  5'- cGGUCGUCCGCGguccggGCGCgCGGuCGgUCGa -3'
miRNA:   3'- -UUAGCAGGCGC------UGCGaGCUuGCaAGC- -5'
10702 3' -53.3 NC_002794.1 + 88689 0.68 0.950482
Target:  5'- cGUCGcUCCGCGAUaCUCGAcCG-UCGg -3'
miRNA:   3'- uUAGC-AGGCGCUGcGAGCUuGCaAGC- -5'
10702 3' -53.3 NC_002794.1 + 100386 0.68 0.950482
Target:  5'- --aCGUCCGCGGCGUggaCG-ACGUggCGu -3'
miRNA:   3'- uuaGCAGGCGCUGCGa--GCuUGCAa-GC- -5'
10702 3' -53.3 NC_002794.1 + 61881 0.69 0.946256
Target:  5'- cGUCGUCgGCGcCGCgcggCGAGCGcggCGa -3'
miRNA:   3'- uUAGCAGgCGCuGCGa---GCUUGCaa-GC- -5'
10702 3' -53.3 NC_002794.1 + 12245 0.69 0.946256
Target:  5'- --cCGUCCGCGGCGC-CGAucCGgaaCGa -3'
miRNA:   3'- uuaGCAGGCGCUGCGaGCUu-GCaa-GC- -5'
10702 3' -53.3 NC_002794.1 + 59220 0.69 0.937111
Target:  5'- -cUCGgCCGCGGCGCgCGAGCucUUCGc -3'
miRNA:   3'- uuAGCaGGCGCUGCGaGCUUGc-AAGC- -5'
10702 3' -53.3 NC_002794.1 + 134123 0.69 0.932187
Target:  5'- --cCGUCCGaCGGCGCggCGAGCGcggaagcUCGg -3'
miRNA:   3'- uuaGCAGGC-GCUGCGa-GCUUGCa------AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.