miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10702 5' -61.9 NC_002794.1 + 118263 0.71 0.437715
Target:  5'- gUCGGCCggggcggcggcgccgGCgUCGGGGACCGCGccgGGCg- -3'
miRNA:   3'- gAGCCGG---------------CG-AGCUCCUGGCGC---UCGag -5'
10702 5' -61.9 NC_002794.1 + 121381 0.71 0.417581
Target:  5'- -cCGGCCGC-CGccGGGACCGCGgccGGCg- -3'
miRNA:   3'- gaGCCGGCGaGC--UCCUGGCGC---UCGag -5'
10702 5' -61.9 NC_002794.1 + 82820 0.71 0.425902
Target:  5'- -gCGGCuCGCUCGAGaGACgcacggcgagCGCGAGCg- -3'
miRNA:   3'- gaGCCG-GCGAGCUC-CUG----------GCGCUCGag -5'
10702 5' -61.9 NC_002794.1 + 112825 0.7 0.486754
Target:  5'- gCUCGGCCGC-CGAGuACgGCu-GCUCg -3'
miRNA:   3'- -GAGCCGGCGaGCUCcUGgCGcuCGAG- -5'
10702 5' -61.9 NC_002794.1 + 111258 0.7 0.4778
Target:  5'- cCUCGGCCgGCagGAugcGGACCGCcAGCUg -3'
miRNA:   3'- -GAGCCGG-CGagCU---CCUGGCGcUCGAg -5'
10702 5' -61.9 NC_002794.1 + 192637 0.7 0.504895
Target:  5'- -gCGGCCGCUCcAGccgcgccGCCGCGcGCUCg -3'
miRNA:   3'- gaGCCGGCGAGcUCc------UGGCGCuCGAG- -5'
10702 5' -61.9 NC_002794.1 + 118743 0.7 0.504895
Target:  5'- gCUCGGCgCGCUC-AGGcCCaggugaCGAGCUCg -3'
miRNA:   3'- -GAGCCG-GCGAGcUCCuGGc-----GCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 10326 0.7 0.502155
Target:  5'- aCUCGGCCG-UCGucGGcGCCGCGAccgggugacggacuGCUCg -3'
miRNA:   3'- -GAGCCGGCgAGCu-CC-UGGCGCU--------------CGAG- -5'
10702 5' -61.9 NC_002794.1 + 134695 0.7 0.495787
Target:  5'- gCUCGaCCGcCUCuGGGGGCCggaguuGCGGGCUCu -3'
miRNA:   3'- -GAGCcGGC-GAG-CUCCUGG------CGCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 145628 0.7 0.495787
Target:  5'- gCUCGGCC-CggaGAucGGACC-CGAGCUCg -3'
miRNA:   3'- -GAGCCGGcGag-CU--CCUGGcGCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 180896 0.7 0.495787
Target:  5'- uCUCGGCCGCg-GAcucGGCCGCGGuCUCg -3'
miRNA:   3'- -GAGCCGGCGagCUc--CUGGCGCUcGAG- -5'
10702 5' -61.9 NC_002794.1 + 178250 0.7 0.460142
Target:  5'- --aGGCCG-UCGAGGGaaGCGGGCUg -3'
miRNA:   3'- gagCCGGCgAGCUCCUggCGCUCGAg -5'
10702 5' -61.9 NC_002794.1 + 44220 0.7 0.468929
Target:  5'- gCUCGGgCGC-CGAGGGCUcggugccggGCG-GCUCg -3'
miRNA:   3'- -GAGCCgGCGaGCUCCUGG---------CGCuCGAG- -5'
10702 5' -61.9 NC_002794.1 + 110381 0.7 0.468046
Target:  5'- uCUCGGCCGCUccucgucCGAGGACUccucggauccgGCGAGa-- -3'
miRNA:   3'- -GAGCCGGCGA-------GCUCCUGG-----------CGCUCgag -5'
10702 5' -61.9 NC_002794.1 + 90420 0.7 0.457523
Target:  5'- aUCGGCCGUccCGAGuGGCCGCugaucaucugaggcGAGCUUu -3'
miRNA:   3'- gAGCCGGCGa-GCUC-CUGGCG--------------CUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 147134 0.69 0.560892
Target:  5'- -aCGGCgGUUCGAgacggccccgGGGCCGCGAGggCc -3'
miRNA:   3'- gaGCCGgCGAGCU----------CCUGGCGCUCgaG- -5'
10702 5' -61.9 NC_002794.1 + 51989 0.69 0.551421
Target:  5'- gCUCGGCCGCUacCGAGagcaguaccuGAUCuaCGGGCUCg -3'
miRNA:   3'- -GAGCCGGCGA--GCUC----------CUGGc-GCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 121979 0.69 0.560892
Target:  5'- gCUCGGucCCGC-CGAGcgcGGCCGgGAGCUg -3'
miRNA:   3'- -GAGCC--GGCGaGCUC---CUGGCgCUCGAg -5'
10702 5' -61.9 NC_002794.1 + 121453 0.69 0.548589
Target:  5'- -aCGGCCGCcgucgggucgaccgUCGAGacGACCGCcGGUUCg -3'
miRNA:   3'- gaGCCGGCG--------------AGCUC--CUGGCGcUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 130208 0.69 0.541998
Target:  5'- gUUGGCCGUgcaGGcGACCGaCGGGCUCc -3'
miRNA:   3'- gAGCCGGCGag-CUcCUGGC-GCUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.