miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10702 5' -61.9 NC_002794.1 + 51989 0.69 0.551421
Target:  5'- gCUCGGCCGCUacCGAGagcaguaccuGAUCuaCGGGCUCg -3'
miRNA:   3'- -GAGCCGGCGA--GCUC----------CUGGc-GCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 121979 0.69 0.560892
Target:  5'- gCUCGGucCCGC-CGAGcgcGGCCGgGAGCUg -3'
miRNA:   3'- -GAGCC--GGCGaGCUC---CUGGCgCUCGAg -5'
10702 5' -61.9 NC_002794.1 + 147134 0.69 0.560892
Target:  5'- -aCGGCgGUUCGAgacggccccgGGGCCGCGAGggCc -3'
miRNA:   3'- gaGCCGgCGAGCU----------CCUGGCGCUCgaG- -5'
10702 5' -61.9 NC_002794.1 + 102651 0.68 0.570408
Target:  5'- -gCGGCgCGCUCgGAGGAgCUGCcGAGCg- -3'
miRNA:   3'- gaGCCG-GCGAG-CUCCU-GGCG-CUCGag -5'
10702 5' -61.9 NC_002794.1 + 86786 0.68 0.574225
Target:  5'- -cCGGCCGCUCcggaaccgaGAccuaggggagauccaGGGCCGCGAcCUCg -3'
miRNA:   3'- gaGCCGGCGAG---------CU---------------CCUGGCGCUcGAG- -5'
10702 5' -61.9 NC_002794.1 + 44301 0.68 0.579962
Target:  5'- --gGGCCgGCgaggCGGGGAgcgaCCGCGAGCg- -3'
miRNA:   3'- gagCCGG-CGa---GCUCCU----GGCGCUCGag -5'
10702 5' -61.9 NC_002794.1 + 22624 0.68 0.58667
Target:  5'- aUCgGGCCGCUCGAGGcgcucggaccgcugAUCGUGAuGCg- -3'
miRNA:   3'- gAG-CCGGCGAGCUCC--------------UGGCGCU-CGag -5'
10702 5' -61.9 NC_002794.1 + 145472 0.68 0.58955
Target:  5'- -gCGGUCGCcgaaggcCGAGGAUCGCGAGgaUg -3'
miRNA:   3'- gaGCCGGCGa------GCUCCUGGCGCUCgaG- -5'
10702 5' -61.9 NC_002794.1 + 90661 0.68 0.58955
Target:  5'- gCUCGcGCCGUUgGGGccGGCCGCGuGGCUg -3'
miRNA:   3'- -GAGC-CGGCGAgCUC--CUGGCGC-UCGAg -5'
10702 5' -61.9 NC_002794.1 + 66950 0.68 0.599166
Target:  5'- --aGGCC-CUCGAGGcCgGCGAgucGCUCg -3'
miRNA:   3'- gagCCGGcGAGCUCCuGgCGCU---CGAG- -5'
10702 5' -61.9 NC_002794.1 + 100529 0.68 0.599166
Target:  5'- gUCGGCgGCacCGAGGAgCaGCGGGCg- -3'
miRNA:   3'- gAGCCGgCGa-GCUCCUgG-CGCUCGag -5'
10702 5' -61.9 NC_002794.1 + 71304 0.68 0.599166
Target:  5'- -cCGGCgCGCUCG-GG-CgGCGAGCg- -3'
miRNA:   3'- gaGCCG-GCGAGCuCCuGgCGCUCGag -5'
10702 5' -61.9 NC_002794.1 + 84758 0.68 0.603018
Target:  5'- -cCGGCCGCgaGAGGGCCGUccgaggcccggcccGGCUCu -3'
miRNA:   3'- gaGCCGGCGagCUCCUGGCGc-------------UCGAG- -5'
10702 5' -61.9 NC_002794.1 + 104894 0.68 0.608803
Target:  5'- -cCGGCCGC--GAGGcGCCGUGcuGCUCg -3'
miRNA:   3'- gaGCCGGCGagCUCC-UGGCGCu-CGAG- -5'
10702 5' -61.9 NC_002794.1 + 178326 0.68 0.608803
Target:  5'- cCUCGuagaGCCGCUCuGGuGACCGCGuGGCg- -3'
miRNA:   3'- -GAGC----CGGCGAGcUC-CUGGCGC-UCGag -5'
10702 5' -61.9 NC_002794.1 + 105548 0.68 0.618456
Target:  5'- -gCGGCgGCUCGggcgaacggauaGGGugCGCguagagcagGAGCUCg -3'
miRNA:   3'- gaGCCGgCGAGC------------UCCugGCG---------CUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 77038 0.68 0.628117
Target:  5'- gCUCGuccCCGCUCGugccgcGGACCGCGucccGCUUu -3'
miRNA:   3'- -GAGCc--GGCGAGCu-----CCUGGCGCu---CGAG- -5'
10702 5' -61.9 NC_002794.1 + 125764 0.68 0.628117
Target:  5'- -cCGGCgGCUCGccacccGGCUGCGAGCg- -3'
miRNA:   3'- gaGCCGgCGAGCuc----CUGGCGCUCGag -5'
10702 5' -61.9 NC_002794.1 + 137155 0.68 0.628117
Target:  5'- -cCGGCCGCccUCGGucccGGCCGCucGCUCg -3'
miRNA:   3'- gaGCCGGCG--AGCUc---CUGGCGcuCGAG- -5'
10702 5' -61.9 NC_002794.1 + 108178 0.68 0.628117
Target:  5'- ---cGCCGCgacgCGcGGACUGCGAGCg- -3'
miRNA:   3'- gagcCGGCGa---GCuCCUGGCGCUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.