Results 61 - 80 of 101 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10702 | 5' | -61.9 | NC_002794.1 | + | 51989 | 0.69 | 0.551421 |
Target: 5'- gCUCGGCCGCUacCGAGagcaguaccuGAUCuaCGGGCUCg -3' miRNA: 3'- -GAGCCGGCGA--GCUC----------CUGGc-GCUCGAG- -5' |
|||||||
10702 | 5' | -61.9 | NC_002794.1 | + | 121453 | 0.69 | 0.548589 |
Target: 5'- -aCGGCCGCcgucgggucgaccgUCGAGacGACCGCcGGUUCg -3' miRNA: 3'- gaGCCGGCG--------------AGCUC--CUGGCGcUCGAG- -5' |
|||||||
10702 | 5' | -61.9 | NC_002794.1 | + | 130208 | 0.69 | 0.541998 |
Target: 5'- gUUGGCCGUgcaGGcGACCGaCGGGCUCc -3' miRNA: 3'- gAGCCGGCGag-CUcCUGGC-GCUCGAG- -5' |
|||||||
10702 | 5' | -61.9 | NC_002794.1 | + | 12803 | 0.69 | 0.52332 |
Target: 5'- aUCGGCCcggggcccguGCUCGAGGucuACCcCGAGCa- -3' miRNA: 3'- gAGCCGG----------CGAGCUCC---UGGcGCUCGag -5' |
|||||||
10702 | 5' | -61.9 | NC_002794.1 | + | 52794 | 0.69 | 0.514074 |
Target: 5'- gCUCGaGCCGCUCGucGGACgccgGC-AGCUCg -3' miRNA: 3'- -GAGC-CGGCGAGCu-CCUGg---CGcUCGAG- -5' |
|||||||
10702 | 5' | -61.9 | NC_002794.1 | + | 17991 | 0.69 | 0.512233 |
Target: 5'- -aCGGCCGCcggcgaguacuaCGAGGACgGCGuGUUCc -3' miRNA: 3'- gaGCCGGCGa-----------GCUCCUGgCGCuCGAG- -5' |
|||||||
10702 | 5' | -61.9 | NC_002794.1 | + | 118743 | 0.7 | 0.504895 |
Target: 5'- gCUCGGCgCGCUC-AGGcCCaggugaCGAGCUCg -3' miRNA: 3'- -GAGCCG-GCGAGcUCCuGGc-----GCUCGAG- -5' |
|||||||
10702 | 5' | -61.9 | NC_002794.1 | + | 192637 | 0.7 | 0.504895 |
Target: 5'- -gCGGCCGCUCcAGccgcgccGCCGCGcGCUCg -3' miRNA: 3'- gaGCCGGCGAGcUCc------UGGCGCuCGAG- -5' |
|||||||
10702 | 5' | -61.9 | NC_002794.1 | + | 10326 | 0.7 | 0.502155 |
Target: 5'- aCUCGGCCG-UCGucGGcGCCGCGAccgggugacggacuGCUCg -3' miRNA: 3'- -GAGCCGGCgAGCu-CC-UGGCGCU--------------CGAG- -5' |
|||||||
10702 | 5' | -61.9 | NC_002794.1 | + | 180896 | 0.7 | 0.495787 |
Target: 5'- uCUCGGCCGCg-GAcucGGCCGCGGuCUCg -3' miRNA: 3'- -GAGCCGGCGagCUc--CUGGCGCUcGAG- -5' |
|||||||
10702 | 5' | -61.9 | NC_002794.1 | + | 145628 | 0.7 | 0.495787 |
Target: 5'- gCUCGGCC-CggaGAucGGACC-CGAGCUCg -3' miRNA: 3'- -GAGCCGGcGag-CU--CCUGGcGCUCGAG- -5' |
|||||||
10702 | 5' | -61.9 | NC_002794.1 | + | 134695 | 0.7 | 0.495787 |
Target: 5'- gCUCGaCCGcCUCuGGGGGCCggaguuGCGGGCUCu -3' miRNA: 3'- -GAGCcGGC-GAG-CUCCUGG------CGCUCGAG- -5' |
|||||||
10702 | 5' | -61.9 | NC_002794.1 | + | 112825 | 0.7 | 0.486754 |
Target: 5'- gCUCGGCCGC-CGAGuACgGCu-GCUCg -3' miRNA: 3'- -GAGCCGGCGaGCUCcUGgCGcuCGAG- -5' |
|||||||
10702 | 5' | -61.9 | NC_002794.1 | + | 111258 | 0.7 | 0.4778 |
Target: 5'- cCUCGGCCgGCagGAugcGGACCGCcAGCUg -3' miRNA: 3'- -GAGCCGG-CGagCU---CCUGGCGcUCGAg -5' |
|||||||
10702 | 5' | -61.9 | NC_002794.1 | + | 44220 | 0.7 | 0.468929 |
Target: 5'- gCUCGGgCGC-CGAGGGCUcggugccggGCG-GCUCg -3' miRNA: 3'- -GAGCCgGCGaGCUCCUGG---------CGCuCGAG- -5' |
|||||||
10702 | 5' | -61.9 | NC_002794.1 | + | 110381 | 0.7 | 0.468046 |
Target: 5'- uCUCGGCCGCUccucgucCGAGGACUccucggauccgGCGAGa-- -3' miRNA: 3'- -GAGCCGGCGA-------GCUCCUGG-----------CGCUCgag -5' |
|||||||
10702 | 5' | -61.9 | NC_002794.1 | + | 178250 | 0.7 | 0.460142 |
Target: 5'- --aGGCCG-UCGAGGGaaGCGGGCUg -3' miRNA: 3'- gagCCGGCgAGCUCCUggCGCUCGAg -5' |
|||||||
10702 | 5' | -61.9 | NC_002794.1 | + | 90420 | 0.7 | 0.457523 |
Target: 5'- aUCGGCCGUccCGAGuGGCCGCugaucaucugaggcGAGCUUu -3' miRNA: 3'- gAGCCGGCGa-GCUC-CUGGCG--------------CUCGAG- -5' |
|||||||
10702 | 5' | -61.9 | NC_002794.1 | + | 59219 | 0.71 | 0.442835 |
Target: 5'- uCUCGGCCGC-----GGCgCGCGAGCUCu -3' miRNA: 3'- -GAGCCGGCGagcucCUG-GCGCUCGAG- -5' |
|||||||
10702 | 5' | -61.9 | NC_002794.1 | + | 150978 | 0.71 | 0.442835 |
Target: 5'- cCUCGGCCGgUCu-GGA-CGaCGAGCUCg -3' miRNA: 3'- -GAGCCGGCgAGcuCCUgGC-GCUCGAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home