miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10702 5' -61.9 NC_002794.1 + 145855 0.71 0.417581
Target:  5'- gCUCGacgaGCCGC-CGAGGGCCGCGAcCg- -3'
miRNA:   3'- -GAGC----CGGCGaGCUCCUGGCGCUcGag -5'
10702 5' -61.9 NC_002794.1 + 145628 0.7 0.495787
Target:  5'- gCUCGGCC-CggaGAucGGACC-CGAGCUCg -3'
miRNA:   3'- -GAGCCGGcGag-CU--CCUGGcGCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 145472 0.68 0.58955
Target:  5'- -gCGGUCGCcgaaggcCGAGGAUCGCGAGgaUg -3'
miRNA:   3'- gaGCCGGCGa------GCUCCUGGCGCUCgaG- -5'
10702 5' -61.9 NC_002794.1 + 143327 0.71 0.417581
Target:  5'- gUCGGUCGCgugCucGGGCaGCGGGCUCg -3'
miRNA:   3'- gAGCCGGCGa--GcuCCUGgCGCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 143284 0.71 0.409359
Target:  5'- -cCGGCCGCUCGGGGuCgGgCGGGUg- -3'
miRNA:   3'- gaGCCGGCGAGCUCCuGgC-GCUCGag -5'
10702 5' -61.9 NC_002794.1 + 137155 0.68 0.628117
Target:  5'- -cCGGCCGCccUCGGucccGGCCGCucGCUCg -3'
miRNA:   3'- gaGCCGGCG--AGCUc---CUGGCGcuCGAG- -5'
10702 5' -61.9 NC_002794.1 + 134695 0.7 0.495787
Target:  5'- gCUCGaCCGcCUCuGGGGGCCggaguuGCGGGCUCu -3'
miRNA:   3'- -GAGCcGGC-GAG-CUCCUGG------CGCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 130643 0.67 0.665763
Target:  5'- -cCGGCCcgcccgccgccccGC-CGccGGCCGCGGGCUCc -3'
miRNA:   3'- gaGCCGG-------------CGaGCucCUGGCGCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 130208 0.69 0.541998
Target:  5'- gUUGGCCGUgcaGGcGACCGaCGGGCUCc -3'
miRNA:   3'- gAGCCGGCGag-CUcCUGGC-GCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 125764 0.68 0.628117
Target:  5'- -cCGGCgGCUCGccacccGGCUGCGAGCg- -3'
miRNA:   3'- gaGCCGgCGAGCuc----CUGGCGCUCGag -5'
10702 5' -61.9 NC_002794.1 + 122758 0.66 0.714363
Target:  5'- cCUCGaGCUGaUCGAGcgcuCCGCGAGCg- -3'
miRNA:   3'- -GAGC-CGGCgAGCUCcu--GGCGCUCGag -5'
10702 5' -61.9 NC_002794.1 + 121979 0.69 0.560892
Target:  5'- gCUCGGucCCGC-CGAGcgcGGCCGgGAGCUg -3'
miRNA:   3'- -GAGCC--GGCGaGCUC---CUGGCgCUCGAg -5'
10702 5' -61.9 NC_002794.1 + 121453 0.69 0.548589
Target:  5'- -aCGGCCGCcgucgggucgaccgUCGAGacGACCGCcGGUUCg -3'
miRNA:   3'- gaGCCGGCG--------------AGCUC--CUGGCGcUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 121381 0.71 0.417581
Target:  5'- -cCGGCCGC-CGccGGGACCGCGgccGGCg- -3'
miRNA:   3'- gaGCCGGCGaGC--UCCUGGCGC---UCGag -5'
10702 5' -61.9 NC_002794.1 + 121322 0.74 0.298862
Target:  5'- gUUGGCC-CUCGAGGcGCCGCGcGGCUg -3'
miRNA:   3'- gAGCCGGcGAGCUCC-UGGCGC-UCGAg -5'
10702 5' -61.9 NC_002794.1 + 118743 0.7 0.504895
Target:  5'- gCUCGGCgCGCUC-AGGcCCaggugaCGAGCUCg -3'
miRNA:   3'- -GAGCCG-GCGAGcUCCuGGc-----GCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 118263 0.71 0.437715
Target:  5'- gUCGGCCggggcggcggcgccgGCgUCGGGGACCGCGccgGGCg- -3'
miRNA:   3'- gAGCCGG---------------CG-AGCUCCUGGCGC---UCGag -5'
10702 5' -61.9 NC_002794.1 + 115952 0.66 0.723734
Target:  5'- -gCGuGUCGC-CGGGGACCGUGGGg-- -3'
miRNA:   3'- gaGC-CGGCGaGCUCCUGGCGCUCgag -5'
10702 5' -61.9 NC_002794.1 + 115809 0.66 0.711539
Target:  5'- gUCGGCagaaGCUCuuccgccuggaucgGcGGGGCCcgGCGGGCUCg -3'
miRNA:   3'- gAGCCGg---CGAG--------------C-UCCUGG--CGCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 114896 0.87 0.043579
Target:  5'- gCUCGGuCCGCUCGAGGAgCGCGuguAGCUCg -3'
miRNA:   3'- -GAGCC-GGCGAGCUCCUgGCGC---UCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.