miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10702 5' -61.9 NC_002794.1 + 113988 0.67 0.657093
Target:  5'- cCUCGagcaGCCGUUCGAGGcGCCGgagGAGCg- -3'
miRNA:   3'- -GAGC----CGGCGAGCUCC-UGGCg--CUCGag -5'
10702 5' -61.9 NC_002794.1 + 113926 0.74 0.305458
Target:  5'- gUCGGCCGCcgaggCGAcGGGCCGCugccGGGCUUc -3'
miRNA:   3'- gAGCCGGCGa----GCU-CCUGGCG----CUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 112825 0.7 0.486754
Target:  5'- gCUCGGCCGC-CGAGuACgGCu-GCUCg -3'
miRNA:   3'- -GAGCCGGCGaGCUCcUGgCGcuCGAG- -5'
10702 5' -61.9 NC_002794.1 + 111258 0.7 0.4778
Target:  5'- cCUCGGCCgGCagGAugcGGACCGCcAGCUg -3'
miRNA:   3'- -GAGCCGG-CGagCU---CCUGGCGcUCGAg -5'
10702 5' -61.9 NC_002794.1 + 110381 0.7 0.468046
Target:  5'- uCUCGGCCGCUccucgucCGAGGACUccucggauccgGCGAGa-- -3'
miRNA:   3'- -GAGCCGGCGA-------GCUCCUGG-----------CGCUCgag -5'
10702 5' -61.9 NC_002794.1 + 108178 0.68 0.628117
Target:  5'- ---cGCCGCgacgCGcGGACUGCGAGCg- -3'
miRNA:   3'- gagcCGGCGa---GCuCCUGGCGCUCGag -5'
10702 5' -61.9 NC_002794.1 + 107410 0.66 0.711539
Target:  5'- cCUCGGCgGCUauguccUGGGcucugcggcgccucGugCGUGAGCUCa -3'
miRNA:   3'- -GAGCCGgCGA------GCUC--------------CugGCGCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 105548 0.68 0.618456
Target:  5'- -gCGGCgGCUCGggcgaacggauaGGGugCGCguagagcagGAGCUCg -3'
miRNA:   3'- gaGCCGgCGAGC------------UCCugGCG---------CUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 104894 0.68 0.608803
Target:  5'- -cCGGCCGC--GAGGcGCCGUGcuGCUCg -3'
miRNA:   3'- gaGCCGGCGagCUCC-UGGCGCu-CGAG- -5'
10702 5' -61.9 NC_002794.1 + 104424 0.73 0.340102
Target:  5'- cCUCGGCCGC-CGGcccGGacgccGCCGCGGGCg- -3'
miRNA:   3'- -GAGCCGGCGaGCU---CC-----UGGCGCUCGag -5'
10702 5' -61.9 NC_002794.1 + 102651 0.68 0.570408
Target:  5'- -gCGGCgCGCUCgGAGGAgCUGCcGAGCg- -3'
miRNA:   3'- gaGCCG-GCGAG-CUCCU-GGCG-CUCGag -5'
10702 5' -61.9 NC_002794.1 + 102417 0.67 0.684951
Target:  5'- -gCGGCCGUggcCGAGG-CCGCcacgcgcauguccGAGCUg -3'
miRNA:   3'- gaGCCGGCGa--GCUCCuGGCG-------------CUCGAg -5'
10702 5' -61.9 NC_002794.1 + 101609 0.66 0.70493
Target:  5'- -cCGGcCCGCcgggCGGGGGugccguuucguCCGCGAGCg- -3'
miRNA:   3'- gaGCC-GGCGa---GCUCCU-----------GGCGCUCGag -5'
10702 5' -61.9 NC_002794.1 + 100529 0.68 0.599166
Target:  5'- gUCGGCgGCacCGAGGAgCaGCGGGCg- -3'
miRNA:   3'- gAGCCGgCGa-GCUCCUgG-CGCUCGag -5'
10702 5' -61.9 NC_002794.1 + 100338 0.67 0.657093
Target:  5'- -aCGGCCgGCUCuc-GACCGCcGAGCUg -3'
miRNA:   3'- gaGCCGG-CGAGcucCUGGCG-CUCGAg -5'
10702 5' -61.9 NC_002794.1 + 99943 0.67 0.685907
Target:  5'- -gCGGCUGUUCGGccGGACCGCcgacGGCg- -3'
miRNA:   3'- gaGCCGGCGAGCU--CCUGGCGc---UCGag -5'
10702 5' -61.9 NC_002794.1 + 94968 0.67 0.637782
Target:  5'- cCUgGaGCCGacgCGGGGGCUG-GAGCUCu -3'
miRNA:   3'- -GAgC-CGGCga-GCUCCUGGCgCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 94049 0.66 0.742256
Target:  5'- -gCGGCgGCggugCGGGGGCgGCGGGg-- -3'
miRNA:   3'- gaGCCGgCGa---GCUCCUGgCGCUCgag -5'
10702 5' -61.9 NC_002794.1 + 90661 0.68 0.58955
Target:  5'- gCUCGcGCCGUUgGGGccGGCCGCGuGGCUg -3'
miRNA:   3'- -GAGC-CGGCGAgCUC--CUGGCGC-UCGAg -5'
10702 5' -61.9 NC_002794.1 + 90420 0.7 0.457523
Target:  5'- aUCGGCCGUccCGAGuGGCCGCugaucaucugaggcGAGCUUu -3'
miRNA:   3'- gAGCCGGCGa-GCUC-CUGGCG--------------CUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.