Results 61 - 80 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10702 | 5' | -61.9 | NC_002794.1 | + | 87025 | 0.66 | 0.733034 |
Target: 5'- --gGGuCCGCaggaucCGGGGACCGgCGcGGCUCg -3' miRNA: 3'- gagCC-GGCGa-----GCUCCUGGC-GC-UCGAG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 86786 | 0.68 | 0.574225 |
Target: 5'- -cCGGCCGCUCcggaaccgaGAccuaggggagauccaGGGCCGCGAcCUCg -3' miRNA: 3'- gaGCCGGCGAG---------CU---------------CCUGGCGCUcGAG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 85934 | 0.66 | 0.727463 |
Target: 5'- gUUGGCCggGCUCGgaaccgacccggaacGGGGCCGCGGcccuCUCa -3' miRNA: 3'- gAGCCGG--CGAGC---------------UCCUGGCGCUc---GAG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 84981 | 0.66 | 0.733034 |
Target: 5'- -cCGGCCGCgaaaccccaCGAGcccGACCGcCGcGCUCg -3' miRNA: 3'- gaGCCGGCGa--------GCUC---CUGGC-GCuCGAG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 84758 | 0.68 | 0.603018 |
Target: 5'- -cCGGCCGCgaGAGGGCCGUccgaggcccggcccGGCUCu -3' miRNA: 3'- gaGCCGGCGagCUCCUGGCGc-------------UCGAG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 82820 | 0.71 | 0.425902 |
Target: 5'- -gCGGCuCGCUCGAGaGACgcacggcgagCGCGAGCg- -3' miRNA: 3'- gaGCCG-GCGAGCUC-CUG----------GCGCUCGag -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 80902 | 0.66 | 0.733034 |
Target: 5'- -gCGGCC-CUCGAcGAcCCGCGcccGCUCg -3' miRNA: 3'- gaGCCGGcGAGCUcCU-GGCGCu--CGAG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 78147 | 0.74 | 0.279739 |
Target: 5'- gCUCGagacGCCGCUCGA--GCCGCGAGCg- -3' miRNA: 3'- -GAGC----CGGCGAGCUccUGGCGCUCGag -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 77038 | 0.68 | 0.628117 |
Target: 5'- gCUCGuccCCGCUCGugccgcGGACCGCGucccGCUUu -3' miRNA: 3'- -GAGCc--GGCGAGCu-----CCUGGCGCu---CGAG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 71732 | 0.67 | 0.676332 |
Target: 5'- gUUGGCCGCcacgcCGaAGGccGCCGCcGGCUCu -3' miRNA: 3'- gAGCCGGCGa----GC-UCC--UGGCGcUCGAG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 71304 | 0.68 | 0.599166 |
Target: 5'- -cCGGCgCGCUCG-GG-CgGCGAGCg- -3' miRNA: 3'- gaGCCG-GCGAGCuCCuGgCGCUCGag -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 67946 | 0.67 | 0.685907 |
Target: 5'- -aUGGCCuCgacCGAGGACgGCGGGCcCa -3' miRNA: 3'- gaGCCGGcGa--GCUCCUGgCGCUCGaG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 66950 | 0.68 | 0.599166 |
Target: 5'- --aGGCC-CUCGAGGcCgGCGAgucGCUCg -3' miRNA: 3'- gagCCGGcGAGCUCCuGgCGCU---CGAG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 59291 | 0.66 | 0.723734 |
Target: 5'- gCUC-GCCGCUCGAc-GCCGCGcAGCg- -3' miRNA: 3'- -GAGcCGGCGAGCUccUGGCGC-UCGag -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 59219 | 0.71 | 0.442835 |
Target: 5'- uCUCGGCCGC-----GGCgCGCGAGCUCu -3' miRNA: 3'- -GAGCCGGCGagcucCUG-GCGCUCGAG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 58834 | 0.66 | 0.742256 |
Target: 5'- -cCuGCCGCgCGAGGACgccgaCGUGcAGCUCg -3' miRNA: 3'- gaGcCGGCGaGCUCCUG-----GCGC-UCGAG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 57758 | 0.79 | 0.149077 |
Target: 5'- gCUCGacCCGCUCGAGcaGACCGuCGAGCUCa -3' miRNA: 3'- -GAGCc-GGCGAGCUC--CUGGC-GCUCGAG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 55325 | 0.67 | 0.685907 |
Target: 5'- --gGGCgGCUucCGAGGACC-CGGGgUCg -3' miRNA: 3'- gagCCGgCGA--GCUCCUGGcGCUCgAG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 52794 | 0.69 | 0.514074 |
Target: 5'- gCUCGaGCCGCUCGucGGACgccgGC-AGCUCg -3' miRNA: 3'- -GAGC-CGGCGAGCu-CCUGg---CGcUCGAG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 51989 | 0.69 | 0.551421 |
Target: 5'- gCUCGGCCGCUacCGAGagcaguaccuGAUCuaCGGGCUCg -3' miRNA: 3'- -GAGCCGGCGA--GCUC----------CUGGc-GCUCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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