Results 41 - 60 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10702 | 5' | -61.9 | NC_002794.1 | + | 94049 | 0.66 | 0.742256 |
Target: 5'- -gCGGCgGCggugCGGGGGCgGCGGGg-- -3' miRNA: 3'- gaGCCGgCGa---GCUCCUGgCGCUCgag -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 16712 | 0.66 | 0.742256 |
Target: 5'- gCUC-GCCGUcCGAGGAguCUGCGccGGCUCc -3' miRNA: 3'- -GAGcCGGCGaGCUCCU--GGCGC--UCGAG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 187472 | 0.66 | 0.742256 |
Target: 5'- gCUCGGCgCGCgccgggcCGAGGacgagGCCGCGcaGGCg- -3' miRNA: 3'- -GAGCCG-GCGa------GCUCC-----UGGCGC--UCGag -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 185480 | 0.66 | 0.742256 |
Target: 5'- -gCGGCCGCggcgaGGGGACCGCcuauauauucGAuCUCc -3' miRNA: 3'- gaGCCGGCGag---CUCCUGGCG----------CUcGAG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 189456 | 0.66 | 0.742256 |
Target: 5'- gUCGGCCaGCacgCGccgaaAGG-CCGCGGGCgUCg -3' miRNA: 3'- gAGCCGG-CGa--GC-----UCCuGGCGCUCG-AG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 115952 | 0.66 | 0.723734 |
Target: 5'- -gCGuGUCGC-CGGGGACCGUGGGg-- -3' miRNA: 3'- gaGC-CGGCGaGCUCCUGGCGCUCgag -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 591 | 0.66 | 0.723734 |
Target: 5'- cCUCGGuCCGUUCGuGG-CCGgGuGCg- -3' miRNA: 3'- -GAGCC-GGCGAGCuCCuGGCgCuCGag -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 71732 | 0.67 | 0.676332 |
Target: 5'- gUUGGCCGCcacgcCGaAGGccGCCGCcGGCUCu -3' miRNA: 3'- gAGCCGGCGa----GC-UCC--UGGCGcUCGAG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 102417 | 0.67 | 0.684951 |
Target: 5'- -gCGGCCGUggcCGAGG-CCGCcacgcgcauguccGAGCUg -3' miRNA: 3'- gaGCCGGCGa--GCUCCuGGCG-------------CUCGAg -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 99943 | 0.67 | 0.685907 |
Target: 5'- -gCGGCUGUUCGGccGGACCGCcgacGGCg- -3' miRNA: 3'- gaGCCGGCGAGCU--CCUGGCGc---UCGag -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 55325 | 0.67 | 0.685907 |
Target: 5'- --gGGCgGCUucCGAGGACC-CGGGgUCg -3' miRNA: 3'- gagCCGgCGA--GCUCCUGGcGCUCgAG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 67946 | 0.67 | 0.685907 |
Target: 5'- -aUGGCCuCgacCGAGGACgGCGGGCcCa -3' miRNA: 3'- gaGCCGGcGa--GCUCCUGgCGCUCGaG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 189395 | 0.67 | 0.685907 |
Target: 5'- gCUCGGCCacguaGUcCGccAGGGCCaGCGGGUUCu -3' miRNA: 3'- -GAGCCGG-----CGaGC--UCCUGG-CGCUCGAG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 35977 | 0.66 | 0.69449 |
Target: 5'- --gGGcCCGCUCGcGGACCcgguuuuauugucGCgGGGCUCg -3' miRNA: 3'- gagCC-GGCGAGCuCCUGG-------------CG-CUCGAG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 40501 | 0.66 | 0.70493 |
Target: 5'- gCUC-GCCGCUCGAGucacGGCCGcCGAcGCg- -3' miRNA: 3'- -GAGcCGGCGAGCUC----CUGGC-GCU-CGag -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 101609 | 0.66 | 0.70493 |
Target: 5'- -cCGGcCCGCcgggCGGGGGugccguuucguCCGCGAGCg- -3' miRNA: 3'- gaGCC-GGCGa---GCUCCU-----------GGCGCUCGag -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 115809 | 0.66 | 0.711539 |
Target: 5'- gUCGGCagaaGCUCuuccgccuggaucgGcGGGGCCcgGCGGGCUCg -3' miRNA: 3'- gAGCCGg---CGAG--------------C-UCCUGG--CGCUCGAG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 107410 | 0.66 | 0.711539 |
Target: 5'- cCUCGGCgGCUauguccUGGGcucugcggcgccucGugCGUGAGCUCa -3' miRNA: 3'- -GAGCCGgCGA------GCUC--------------CugGCGCUCGAG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 42604 | 0.66 | 0.714363 |
Target: 5'- -gCGGCCGggagcgggcucuCUCGAcGACCGCGcuCUCa -3' miRNA: 3'- gaGCCGGC------------GAGCUcCUGGCGCucGAG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 122758 | 0.66 | 0.714363 |
Target: 5'- cCUCGaGCUGaUCGAGcgcuCCGCGAGCg- -3' miRNA: 3'- -GAGC-CGGCgAGCUCcu--GGCGCUCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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