miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10702 5' -61.9 NC_002794.1 + 40501 0.66 0.70493
Target:  5'- gCUC-GCCGCUCGAGucacGGCCGcCGAcGCg- -3'
miRNA:   3'- -GAGcCGGCGAGCUC----CUGGC-GCU-CGag -5'
10702 5' -61.9 NC_002794.1 + 101609 0.66 0.70493
Target:  5'- -cCGGcCCGCcgggCGGGGGugccguuucguCCGCGAGCg- -3'
miRNA:   3'- gaGCC-GGCGa---GCUCCU-----------GGCGCUCGag -5'
10702 5' -61.9 NC_002794.1 + 35977 0.66 0.69449
Target:  5'- --gGGcCCGCUCGcGGACCcgguuuuauugucGCgGGGCUCg -3'
miRNA:   3'- gagCC-GGCGAGCuCCUGG-------------CG-CUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 189395 0.67 0.685907
Target:  5'- gCUCGGCCacguaGUcCGccAGGGCCaGCGGGUUCu -3'
miRNA:   3'- -GAGCCGG-----CGaGC--UCCUGG-CGCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 67946 0.67 0.685907
Target:  5'- -aUGGCCuCgacCGAGGACgGCGGGCcCa -3'
miRNA:   3'- gaGCCGGcGa--GCUCCUGgCGCUCGaG- -5'
10702 5' -61.9 NC_002794.1 + 55325 0.67 0.685907
Target:  5'- --gGGCgGCUucCGAGGACC-CGGGgUCg -3'
miRNA:   3'- gagCCGgCGA--GCUCCUGGcGCUCgAG- -5'
10702 5' -61.9 NC_002794.1 + 99943 0.67 0.685907
Target:  5'- -gCGGCUGUUCGGccGGACCGCcgacGGCg- -3'
miRNA:   3'- gaGCCGGCGAGCU--CCUGGCGc---UCGag -5'
10702 5' -61.9 NC_002794.1 + 102417 0.67 0.684951
Target:  5'- -gCGGCCGUggcCGAGG-CCGCcacgcgcauguccGAGCUg -3'
miRNA:   3'- gaGCCGGCGa--GCUCCuGGCG-------------CUCGAg -5'
10702 5' -61.9 NC_002794.1 + 154331 0.67 0.676332
Target:  5'- gUCGGUCGUccCGGGuGCCGCggccGAGCUCc -3'
miRNA:   3'- gAGCCGGCGa-GCUCcUGGCG----CUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 185341 0.67 0.676332
Target:  5'- gUCGaCCGCUCGcGcGccGCCGCGAGCg- -3'
miRNA:   3'- gAGCcGGCGAGCuC-C--UGGCGCUCGag -5'
10702 5' -61.9 NC_002794.1 + 180684 0.67 0.676332
Target:  5'- -cCGGCCGCUCccGGcGCCcgGCGGGCg- -3'
miRNA:   3'- gaGCCGGCGAGcuCC-UGG--CGCUCGag -5'
10702 5' -61.9 NC_002794.1 + 71732 0.67 0.676332
Target:  5'- gUUGGCCGCcacgcCGaAGGccGCCGCcGGCUCu -3'
miRNA:   3'- gAGCCGGCGa----GC-UCC--UGGCGcUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 152357 0.67 0.666725
Target:  5'- -aCGGCCGCUUGGaacGGAUCgGCGAcacGCUg -3'
miRNA:   3'- gaGCCGGCGAGCU---CCUGG-CGCU---CGAg -5'
10702 5' -61.9 NC_002794.1 + 130643 0.67 0.665763
Target:  5'- -cCGGCCcgcccgccgccccGC-CGccGGCCGCGGGCUCc -3'
miRNA:   3'- gaGCCGG-------------CGaGCucCUGGCGCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 34281 0.67 0.657093
Target:  5'- -gCGGCCaGCgCcAGcGACCGgGAGCUCu -3'
miRNA:   3'- gaGCCGG-CGaGcUC-CUGGCgCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 100338 0.67 0.657093
Target:  5'- -aCGGCCgGCUCuc-GACCGCcGAGCUg -3'
miRNA:   3'- gaGCCGG-CGAGcucCUGGCG-CUCGAg -5'
10702 5' -61.9 NC_002794.1 + 113988 0.67 0.657093
Target:  5'- cCUCGagcaGCCGUUCGAGGcGCCGgagGAGCg- -3'
miRNA:   3'- -GAGC----CGGCGAGCUCC-UGGCg--CUCGag -5'
10702 5' -61.9 NC_002794.1 + 94968 0.67 0.637782
Target:  5'- cCUgGaGCCGacgCGGGGGCUG-GAGCUCu -3'
miRNA:   3'- -GAgC-CGGCga-GCUCCUGGCgCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 29217 0.67 0.637782
Target:  5'- gUCGGCgGC-CGucGGCCGCcGAGCa- -3'
miRNA:   3'- gAGCCGgCGaGCucCUGGCG-CUCGag -5'
10702 5' -61.9 NC_002794.1 + 1691 0.67 0.637782
Target:  5'- -cCGGCCuGauaCGGGGACCGgGGGCg- -3'
miRNA:   3'- gaGCCGG-Cga-GCUCCUGGCgCUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.