miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10703 3' -61.4 NC_002794.1 + 118741 0.69 0.559761
Target:  5'- -cUGCUCGGcGCGCUCAGGCcCAGGu -3'
miRNA:   3'- caACGGGCCcCGCGGGUCUGaGUCUg -5'
10703 3' -61.4 NC_002794.1 + 50805 0.69 0.558799
Target:  5'- --cGCCCGGcgucgggcgcuccGGCGCCCccgccCUCGGGCg -3'
miRNA:   3'- caaCGGGCC-------------CCGCGGGucu--GAGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 68784 0.69 0.559761
Target:  5'- --cGCCCGGcucucGCGCCCcGGCUaacaGGACg -3'
miRNA:   3'- caaCGGGCCc----CGCGGGuCUGAg---UCUG- -5'
10703 3' -61.4 NC_002794.1 + 186015 0.68 0.588824
Target:  5'- --cGCuCCGGGcccGgGCCCGGACcCGGGCc -3'
miRNA:   3'- caaCG-GGCCC---CgCGGGUCUGaGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 86203 0.68 0.588824
Target:  5'- -aUGCuCCGGGccGCGCCC-GAC-CGGAUg -3'
miRNA:   3'- caACG-GGCCC--CGCGGGuCUGaGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 115826 0.68 0.5791
Target:  5'- --cGCCUGGaucggcGGgGCCCggcGGGCUCGGGCc -3'
miRNA:   3'- caaCGGGCC------CCgCGGG---UCUGAGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 141441 0.68 0.588824
Target:  5'- --cGCCgGGGGCGCCgGGAg-CGGcGCg -3'
miRNA:   3'- caaCGGgCCCCGCGGgUCUgaGUC-UG- -5'
10703 3' -61.4 NC_002794.1 + 86515 0.68 0.588824
Target:  5'- -aUGCuCCGGGccGCGCCC-GAC-CGGAUg -3'
miRNA:   3'- caACG-GGCCC--CGCGGGuCUGaGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 86395 0.68 0.588824
Target:  5'- -aUGCuCCGGGccGCGCCC-GAC-CGGAUg -3'
miRNA:   3'- caACG-GGCCC--CGCGGGuCUGaGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 86347 0.68 0.588824
Target:  5'- -aUGCuCCGGGccGCGCCC-GAC-CGGAUg -3'
miRNA:   3'- caACG-GGCCC--CGCGGGuCUGaGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 180698 0.67 0.676858
Target:  5'- --cGCCCGgcGGGCGgaCCAuGGCUCGGGu -3'
miRNA:   3'- caaCGGGC--CCCGCg-GGU-CUGAGUCUg -5'
10703 3' -61.4 NC_002794.1 + 113652 0.67 0.675885
Target:  5'- --gGCCCGGcguccucGGCGUCCAGcgcgGCgagCAGGCc -3'
miRNA:   3'- caaCGGGCC-------CCGCGGGUC----UGa--GUCUG- -5'
10703 3' -61.4 NC_002794.1 + 129331 0.67 0.667113
Target:  5'- --cGCCCGGGGCGgcgguuUCCAGAa-CGGGg -3'
miRNA:   3'- caaCGGGCCCCGC------GGGUCUgaGUCUg -5'
10703 3' -61.4 NC_002794.1 + 188946 0.67 0.657342
Target:  5'- -cUGUCCGGGcGUGCgCAGGUUCAGGu -3'
miRNA:   3'- caACGGGCCC-CGCGgGUCUGAGUCUg -5'
10703 3' -61.4 NC_002794.1 + 86563 0.67 0.647553
Target:  5'- -aUGCuCCGGGccGCGCCC-GAC-CGGAUu -3'
miRNA:   3'- caACG-GGCCC--CGCGGGuCUGaGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 195123 0.67 0.627947
Target:  5'- --cGCCCGcGGcGCGCgCGGGCUCgcguacaccaccGGACc -3'
miRNA:   3'- caaCGGGC-CC-CGCGgGUCUGAG------------UCUG- -5'
10703 3' -61.4 NC_002794.1 + 82188 0.67 0.637752
Target:  5'- --aGCCCGGGcgccccgaGCGCCCGGcACUCc--- -3'
miRNA:   3'- caaCGGGCCC--------CGCGGGUC-UGAGucug -5'
10703 3' -61.4 NC_002794.1 + 182013 0.67 0.627947
Target:  5'- --aGCCCGGgaccccGGCGUCCGGGCcgCcGGCg -3'
miRNA:   3'- caaCGGGCC------CCGCGGGUCUGa-GuCUG- -5'
10703 3' -61.4 NC_002794.1 + 141790 0.66 0.715424
Target:  5'- --cGUCCGacGGGCGCgggUCGGcCUCGGACa -3'
miRNA:   3'- caaCGGGC--CCCGCG---GGUCuGAGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 17966 0.66 0.715424
Target:  5'- --cGCCCGGgccgugagccuGGCGCCCAcGGCcgCcGGCg -3'
miRNA:   3'- caaCGGGCC-----------CCGCGGGU-CUGa-GuCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.