Results 41 - 48 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10703 | 3' | -61.4 | NC_002794.1 | + | 141790 | 0.66 | 0.715424 |
Target: 5'- --cGUCCGacGGGCGCgggUCGGcCUCGGACa -3' miRNA: 3'- caaCGGGC--CCCGCG---GGUCuGAGUCUG- -5' |
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10703 | 3' | -61.4 | NC_002794.1 | + | 17966 | 0.66 | 0.715424 |
Target: 5'- --cGCCCGGgccgugagccuGGCGCCCAcGGCcgCcGGCg -3' miRNA: 3'- caaCGGGCC-----------CCGCGGGU-CUGa-GuCUG- -5' |
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10703 | 3' | -61.4 | NC_002794.1 | + | 37335 | 0.66 | 0.722081 |
Target: 5'- uGggGCCCGggcggcagcaggucGGGC-CCCAGguagucgaaGCUCGGGCg -3' miRNA: 3'- -CaaCGGGC--------------CCCGcGGGUC---------UGAGUCUG- -5' |
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10703 | 3' | -61.4 | NC_002794.1 | + | 19527 | 0.66 | 0.724923 |
Target: 5'- --aGCgCCGGcgcGGCGCggcccgCCGGugUCGGACc -3' miRNA: 3'- caaCG-GGCC---CCGCG------GGUCugAGUCUG- -5' |
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10703 | 3' | -61.4 | NC_002794.1 | + | 44498 | 0.66 | 0.724923 |
Target: 5'- cGUUGUCUcacGGCgGCCCAGAC-CGGGCc -3' miRNA: 3'- -CAACGGGcc-CCG-CGGGUCUGaGUCUG- -5' |
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10703 | 3' | -61.4 | NC_002794.1 | + | 44214 | 0.66 | 0.724923 |
Target: 5'- --cGUCCGGcucgGGCGCCgaGGGCUCGGuGCc -3' miRNA: 3'- caaCGGGCC----CCGCGGg-UCUGAGUC-UG- -5' |
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10703 | 3' | -61.4 | NC_002794.1 | + | 85020 | 0.66 | 0.734348 |
Target: 5'- -gUGCCCcGGGCccacGCUCGGGugcCUCGGGCc -3' miRNA: 3'- caACGGGcCCCG----CGGGUCU---GAGUCUG- -5' |
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10703 | 3' | -61.4 | NC_002794.1 | + | 148134 | 0.66 | 0.734348 |
Target: 5'- --gGCgCGGGGcCGCCgGGGCgaGGGCg -3' miRNA: 3'- caaCGgGCCCC-GCGGgUCUGagUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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