Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10703 | 3' | -61.4 | NC_002794.1 | + | 86347 | 0.68 | 0.588824 |
Target: 5'- -aUGCuCCGGGccGCGCCC-GAC-CGGAUg -3' miRNA: 3'- caACG-GGCCC--CGCGGGuCUGaGUCUG- -5' |
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10703 | 3' | -61.4 | NC_002794.1 | + | 86395 | 0.68 | 0.588824 |
Target: 5'- -aUGCuCCGGGccGCGCCC-GAC-CGGAUg -3' miRNA: 3'- caACG-GGCCC--CGCGGGuCUGaGUCUG- -5' |
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10703 | 3' | -61.4 | NC_002794.1 | + | 86515 | 0.68 | 0.588824 |
Target: 5'- -aUGCuCCGGGccGCGCCC-GAC-CGGAUg -3' miRNA: 3'- caACG-GGCCC--CGCGGGuCUGaGUCUG- -5' |
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10703 | 3' | -61.4 | NC_002794.1 | + | 141441 | 0.68 | 0.588824 |
Target: 5'- --cGCCgGGGGCGCCgGGAg-CGGcGCg -3' miRNA: 3'- caaCGGgCCCCGCGGgUCUgaGUC-UG- -5' |
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10703 | 3' | -61.4 | NC_002794.1 | + | 115826 | 0.68 | 0.5791 |
Target: 5'- --cGCCUGGaucggcGGgGCCCggcGGGCUCGGGCc -3' miRNA: 3'- caaCGGGCC------CCgCGGG---UCUGAGUCUG- -5' |
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10703 | 3' | -61.4 | NC_002794.1 | + | 68784 | 0.69 | 0.559761 |
Target: 5'- --cGCCCGGcucucGCGCCCcGGCUaacaGGACg -3' miRNA: 3'- caaCGGGCCc----CGCGGGuCUGAg---UCUG- -5' |
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10703 | 3' | -61.4 | NC_002794.1 | + | 118741 | 0.69 | 0.559761 |
Target: 5'- -cUGCUCGGcGCGCUCAGGCcCAGGu -3' miRNA: 3'- caACGGGCCcCGCGGGUCUGaGUCUg -5' |
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10703 | 3' | -61.4 | NC_002794.1 | + | 50805 | 0.69 | 0.558799 |
Target: 5'- --cGCCCGGcgucgggcgcuccGGCGCCCccgccCUCGGGCg -3' miRNA: 3'- caaCGGGCC-------------CCGCGGGucu--GAGUCUG- -5' |
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10703 | 3' | -61.4 | NC_002794.1 | + | 143275 | 0.7 | 0.493787 |
Target: 5'- --gGCCCGGcgccGGcCGCUCGGGgUCGGGCg -3' miRNA: 3'- caaCGGGCC----CC-GCGGGUCUgAGUCUG- -5' |
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10703 | 3' | -61.4 | NC_002794.1 | + | 178808 | 0.7 | 0.484641 |
Target: 5'- --gGCCCGGGGgGaCCgGGcACUCGGGu -3' miRNA: 3'- caaCGGGCCCCgC-GGgUC-UGAGUCUg -5' |
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10703 | 3' | -61.4 | NC_002794.1 | + | 96778 | 0.7 | 0.475577 |
Target: 5'- --cGCCCGGGGUccuCCUGGACUUGGuACg -3' miRNA: 3'- caaCGGGCCCCGc--GGGUCUGAGUC-UG- -5' |
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10703 | 3' | -61.4 | NC_002794.1 | + | 35644 | 0.7 | 0.466599 |
Target: 5'- --aGaCCCGGGacggGCGCCCGGuCUCcGACg -3' miRNA: 3'- caaC-GGGCCC----CGCGGGUCuGAGuCUG- -5' |
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10703 | 3' | -61.4 | NC_002794.1 | + | 82696 | 0.7 | 0.457709 |
Target: 5'- --cGCCCGGcGCGCCgAGACgcgccgaGGACg -3' miRNA: 3'- caaCGGGCCcCGCGGgUCUGag-----UCUG- -5' |
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10703 | 3' | -61.4 | NC_002794.1 | + | 139342 | 0.71 | 0.431597 |
Target: 5'- -gUGaCCGGGGCcaggcCCCAGAC-CAGGCa -3' miRNA: 3'- caACgGGCCCCGc----GGGUCUGaGUCUG- -5' |
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10703 | 3' | -61.4 | NC_002794.1 | + | 119097 | 0.71 | 0.431597 |
Target: 5'- gGUUGCUgGuGGGCGUCCAGAuCggGGACg -3' miRNA: 3'- -CAACGGgC-CCCGCGGGUCU-GagUCUG- -5' |
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10703 | 3' | -61.4 | NC_002794.1 | + | 24431 | 0.71 | 0.431597 |
Target: 5'- -aUGCUCGGGGCGCCCcuguauauACaUAGACa -3' miRNA: 3'- caACGGGCCCCGCGGGuc------UGaGUCUG- -5' |
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10703 | 3' | -61.4 | NC_002794.1 | + | 23617 | 0.71 | 0.423089 |
Target: 5'- ---cCCCGcGGGCGCCCGGACgcgCGGcCc -3' miRNA: 3'- caacGGGC-CCCGCGGGUCUGa--GUCuG- -5' |
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10703 | 3' | -61.4 | NC_002794.1 | + | 70295 | 0.71 | 0.414682 |
Target: 5'- --gGCCgGGGGgGCCCGGGCgcgaAGAg -3' miRNA: 3'- caaCGGgCCCCgCGGGUCUGag--UCUg -5' |
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10703 | 3' | -61.4 | NC_002794.1 | + | 66810 | 0.72 | 0.390088 |
Target: 5'- --cGCCCGGcaucgucagGGCGCCCGgcgcGACUcCGGGCg -3' miRNA: 3'- caaCGGGCC---------CCGCGGGU----CUGA-GUCUG- -5' |
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10703 | 3' | -61.4 | NC_002794.1 | + | 115871 | 0.72 | 0.382105 |
Target: 5'- aGggGUCCGGGGCGUCCgGGGCguccgCGGAg -3' miRNA: 3'- -CaaCGGGCCCCGCGGG-UCUGa----GUCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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