Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10703 | 5' | -54 | NC_002794.1 | + | 143528 | 0.68 | 0.946779 |
Target: 5'- gUCGCCCGcGUCCAGGaggcGCGgcacGAGCAc- -3' miRNA: 3'- -GGCGGGC-CAGGUCUa---UGCa---CUUGUcu -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 188940 | 0.68 | 0.954876 |
Target: 5'- -gGCCCGcuGUCCGG--GCGUGcGCAGGu -3' miRNA: 3'- ggCGGGC--CAGGUCuaUGCACuUGUCU- -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 105672 | 0.68 | 0.954876 |
Target: 5'- uCCGCCCGGaccgCCGGGaACGU---CGGAa -3' miRNA: 3'- -GGCGGGCCa---GGUCUaUGCAcuuGUCU- -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 88776 | 0.67 | 0.974044 |
Target: 5'- gUCGCCgGuGUaaUCGGAU-CGUGAACGGGc -3' miRNA: 3'- -GGCGGgC-CA--GGUCUAuGCACUUGUCU- -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 192998 | 0.67 | 0.971355 |
Target: 5'- cUCGCCCGGcgugugcagcgCCAGcgGCGUGuACAu- -3' miRNA: 3'- -GGCGGGCCa----------GGUCuaUGCACuUGUcu -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 136877 | 0.67 | 0.962096 |
Target: 5'- -gGCCCGGaUCUGGA--CGUgGAGCAGGg -3' miRNA: 3'- ggCGGGCC-AGGUCUauGCA-CUUGUCU- -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 111320 | 0.67 | 0.974044 |
Target: 5'- aCGCCgGG-CCAGcgGCGcgGGccGCAGAu -3' miRNA: 3'- gGCGGgCCaGGUCuaUGCa-CU--UGUCU- -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 128331 | 0.67 | 0.971355 |
Target: 5'- cCCGCCCGGaCgCGGuggAC-UGAGCAGu -3' miRNA: 3'- -GGCGGGCCaG-GUCua-UGcACUUGUCu -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 12204 | 0.67 | 0.974044 |
Target: 5'- gCCGCUCGGacgugCCGGcgGCGUcGGCGGc -3' miRNA: 3'- -GGCGGGCCa----GGUCuaUGCAcUUGUCu -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 47740 | 0.67 | 0.971355 |
Target: 5'- cCCGCCgGGUCCAcGUGgcggcCGUGGucGCGGc -3' miRNA: 3'- -GGCGGgCCAGGUcUAU-----GCACU--UGUCu -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 133934 | 0.67 | 0.971355 |
Target: 5'- gCGCCC-GUCCAGuUGCGgggUGAcCGGAa -3' miRNA: 3'- gGCGGGcCAGGUCuAUGC---ACUuGUCU- -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 45943 | 0.67 | 0.971355 |
Target: 5'- cCCGCCCGGUgaccgucucUCGGGcGCGUGAu---- -3' miRNA: 3'- -GGCGGGCCA---------GGUCUaUGCACUugucu -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 44453 | 0.67 | 0.969648 |
Target: 5'- cCCGCCCGGacgUCGGcgGCG-GAgaccgccccgucgaaACAGAg -3' miRNA: 3'- -GGCGGGCCa--GGUCuaUGCaCU---------------UGUCU- -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 104268 | 0.67 | 0.968471 |
Target: 5'- gCCGCUCGG-CCGGcacCGUgccGAACAGGa -3' miRNA: 3'- -GGCGGGCCaGGUCuauGCA---CUUGUCU- -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 154163 | 0.67 | 0.968471 |
Target: 5'- uUCGCgCGGggCAGAacUACGUGAuCAGGg -3' miRNA: 3'- -GGCGgGCCagGUCU--AUGCACUuGUCU- -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 112341 | 0.67 | 0.965386 |
Target: 5'- gCCGgCCGGcggcgCCGGcgGCG-GGGCGGGg -3' miRNA: 3'- -GGCgGGCCa----GGUCuaUGCaCUUGUCU- -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 99410 | 0.67 | 0.965067 |
Target: 5'- cCCGCCCgccgucgcagcagGGUCCGGGUuuGUuGGACcGGAu -3' miRNA: 3'- -GGCGGG-------------CCAGGUCUAugCA-CUUG-UCU- -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 138452 | 0.66 | 0.978865 |
Target: 5'- gCGCCuCGG-CCuGcgACGUGGACGuGAc -3' miRNA: 3'- gGCGG-GCCaGGuCuaUGCACUUGU-CU- -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 91978 | 0.66 | 0.978865 |
Target: 5'- aCCGCCUGG-CCAucUACaacacgGGGCAGAa -3' miRNA: 3'- -GGCGGGCCaGGUcuAUGca----CUUGUCU- -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 30394 | 0.66 | 0.98101 |
Target: 5'- gCCGCCCGcGaCguGAUGcCGUGGucgaacgucguGCAGAu -3' miRNA: 3'- -GGCGGGC-CaGguCUAU-GCACU-----------UGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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