Results 41 - 46 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10703 | 5' | -54 | NC_002794.1 | + | 30394 | 0.66 | 0.98101 |
Target: 5'- gCCGCCCGcGaCguGAUGcCGUGGucgaacgucguGCAGAu -3' miRNA: 3'- -GGCGGGC-CaGguCUAU-GCACU-----------UGUCU- -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 138452 | 0.66 | 0.978865 |
Target: 5'- gCGCCuCGG-CCuGcgACGUGGACGuGAc -3' miRNA: 3'- gGCGG-GCCaGGuCuaUGCACUUGU-CU- -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 91978 | 0.66 | 0.978865 |
Target: 5'- aCCGCCUGG-CCAucUACaacacgGGGCAGAa -3' miRNA: 3'- -GGCGGGCCaGGUcuAUGca----CUUGUCU- -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 115611 | 0.66 | 0.978865 |
Target: 5'- cUCGCCCGGcgCCGGGagGCG-GGuCAGGu -3' miRNA: 3'- -GGCGGGCCa-GGUCUa-UGCaCUuGUCU- -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 33079 | 0.66 | 0.984277 |
Target: 5'- aCGCUCGaauucuUCCAGAUccuccacggcgugaACGUGAGCGGc -3' miRNA: 3'- gGCGGGCc-----AGGUCUA--------------UGCACUUGUCu -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 147080 | 0.66 | 0.976545 |
Target: 5'- gCGCCCGGUCCaaGGAcgaagGCGUcGGCGc- -3' miRNA: 3'- gGCGGGCCAGG--UCUa----UGCAcUUGUcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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