Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10703 | 5' | -54 | NC_002794.1 | + | 112341 | 0.67 | 0.965386 |
Target: 5'- gCCGgCCGGcggcgCCGGcgGCG-GGGCGGGg -3' miRNA: 3'- -GGCgGGCCa----GGUCuaUGCaCUUGUCU- -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 99410 | 0.67 | 0.965067 |
Target: 5'- cCCGCCCgccgucgcagcagGGUCCGGGUuuGUuGGACcGGAu -3' miRNA: 3'- -GGCGGG-------------CCAGGUCUAugCA-CUUG-UCU- -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 136877 | 0.67 | 0.962096 |
Target: 5'- -gGCCCGGaUCUGGA--CGUgGAGCAGGg -3' miRNA: 3'- ggCGGGCC-AGGUCUauGCA-CUUGUCU- -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 105672 | 0.68 | 0.954876 |
Target: 5'- uCCGCCCGGaccgCCGGGaACGU---CGGAa -3' miRNA: 3'- -GGCGGGCCa---GGUCUaUGCAcuuGUCU- -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 188940 | 0.68 | 0.954876 |
Target: 5'- -gGCCCGcuGUCCGG--GCGUGcGCAGGu -3' miRNA: 3'- ggCGGGC--CAGGUCuaUGCACuUGUCU- -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 94672 | 0.68 | 0.950939 |
Target: 5'- gUGCCCGG-CCuug-GCG-GAGCAGAa -3' miRNA: 3'- gGCGGGCCaGGucuaUGCaCUUGUCU- -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 143528 | 0.68 | 0.946779 |
Target: 5'- gUCGCCCGcGUCCAGGaggcGCGgcacGAGCAc- -3' miRNA: 3'- -GGCGGGC-CAGGUCUa---UGCa---CUUGUcu -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 142901 | 0.68 | 0.946779 |
Target: 5'- gUGCCCGGcguccUCCGGGggcCG-GAGCAGGa -3' miRNA: 3'- gGCGGGCC-----AGGUCUau-GCaCUUGUCU- -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 195359 | 0.68 | 0.946779 |
Target: 5'- aCGCCCGGaCCAGGgacucguacUGCGcGAACGa- -3' miRNA: 3'- gGCGGGCCaGGUCU---------AUGCaCUUGUcu -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 43855 | 0.68 | 0.942392 |
Target: 5'- cCCGCUCGGcCCGGGgcACGUaGACGGu -3' miRNA: 3'- -GGCGGGCCaGGUCUa-UGCAcUUGUCu -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 71274 | 0.69 | 0.932932 |
Target: 5'- uCCGCgCGGUCCcGAUACGgaaAAUAGc -3' miRNA: 3'- -GGCGgGCCAGGuCUAUGCac-UUGUCu -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 80405 | 0.69 | 0.927857 |
Target: 5'- cUCGCCgCGGcCCAGGUgGCGccGGGCGGGg -3' miRNA: 3'- -GGCGG-GCCaGGUCUA-UGCa-CUUGUCU- -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 130433 | 0.69 | 0.922549 |
Target: 5'- gCCGUCUGGUCCAGGcgucCGUGuuggGCGGc -3' miRNA: 3'- -GGCGGGCCAGGUCUau--GCACu---UGUCu -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 104454 | 0.69 | 0.922549 |
Target: 5'- gCgGCCCGaGcCCGGGcgGCGUGuGCAGGa -3' miRNA: 3'- -GgCGGGC-CaGGUCUa-UGCACuUGUCU- -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 119091 | 0.69 | 0.922006 |
Target: 5'- gCGCCCGGuugcuggugggcgUCCAGAU-CGggGAcGCAGAa -3' miRNA: 3'- gGCGGGCC-------------AGGUCUAuGCa-CU-UGUCU- -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 154361 | 0.7 | 0.89257 |
Target: 5'- cCCGCgCGGUCCAGGccgcgGCGgcGGCGGGc -3' miRNA: 3'- -GGCGgGCCAGGUCUa----UGCacUUGUCU- -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 15321 | 0.7 | 0.871913 |
Target: 5'- cCCGCaggugaCGuGUCCGGAcgGCGUGGcCAGAu -3' miRNA: 3'- -GGCGg-----GC-CAGGUCUa-UGCACUuGUCU- -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 69832 | 0.71 | 0.866819 |
Target: 5'- uCCGCCCGGUCCGcuggcucaccgccuCGcGAACAGGc -3' miRNA: 3'- -GGCGGGCCAGGUcuau----------GCaCUUGUCU- -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 71077 | 0.71 | 0.864605 |
Target: 5'- gCCGCCgGGUCCAGAc----GAACAGc -3' miRNA: 3'- -GGCGGgCCAGGUCUaugcaCUUGUCu -5' |
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10703 | 5' | -54 | NC_002794.1 | + | 2018 | 0.71 | 0.860122 |
Target: 5'- gCGCCCgccggccuuauacggGGUCCGGggGCGUGuuccucgccaaAACAGAg -3' miRNA: 3'- gGCGGG---------------CCAGGUCuaUGCAC-----------UUGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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