miRNA display CGI


Results 41 - 60 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10704 3' -60.1 NC_002794.1 + 37115 0.67 0.706545
Target:  5'- cGU-CACGGCGaagaCCCG-CAGcUCCGCCGg -3'
miRNA:   3'- -CAuGUGCCGCg---GGGUgGUC-AGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 43043 0.67 0.735114
Target:  5'- -cGCGCGGCagGCCgaGCCGG-CCACCc -3'
miRNA:   3'- caUGUGCCG--CGGggUGGUCaGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 193051 0.67 0.735114
Target:  5'- -cGCACaGCGCCCgCACCGG-CUgcggGCCGu -3'
miRNA:   3'- caUGUGcCGCGGG-GUGGUCaGG----UGGU- -5'
10704 3' -60.1 NC_002794.1 + 59316 0.67 0.753761
Target:  5'- --cCACGGCGCgCCCgacuucGCCGcccgCCACCAc -3'
miRNA:   3'- cauGUGCCGCG-GGG------UGGUca--GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 70702 0.67 0.754683
Target:  5'- -cGCugGGgGUCCCACCcacugcgaacgcucUCCGCCAc -3'
miRNA:   3'- caUGugCCgCGGGGUGGuc------------AGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 78108 0.67 0.753761
Target:  5'- -aACGCGGCGgCgCCuCCAGacgCCGCCc -3'
miRNA:   3'- caUGUGCCGCgG-GGuGGUCa--GGUGGu -5'
10704 3' -60.1 NC_002794.1 + 56928 0.67 0.753761
Target:  5'- cUGC-CGGC-CUCgCACCAGaCCACCAu -3'
miRNA:   3'- cAUGuGCCGcGGG-GUGGUCaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 46587 0.67 0.753761
Target:  5'- -gACAC-GCGaCCCUgaACCuGUCCGCCGc -3'
miRNA:   3'- caUGUGcCGC-GGGG--UGGuCAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 84185 0.67 0.744483
Target:  5'- -gGCcCGGCGCucggCCCGCCuc-CCACCAc -3'
miRNA:   3'- caUGuGCCGCG----GGGUGGucaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 76454 0.67 0.74355
Target:  5'- --cCGUGGCGCCcgccccuCCACC-GUCCGCCGg -3'
miRNA:   3'- cauGUGCCGCGG-------GGUGGuCAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 105911 0.67 0.744483
Target:  5'- -gGCgGCGGCGCUaCCGCCg--CCGCCGg -3'
miRNA:   3'- caUG-UGCCGCGG-GGUGGucaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 64387 0.67 0.735114
Target:  5'- cUGCGCcucCGCCCCgGCCAGagggCCACCGu -3'
miRNA:   3'- cAUGUGcc-GCGGGG-UGGUCa---GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 157310 0.67 0.738872
Target:  5'- -cACGCGGCGCUCgaagacgaagacgcgCGuCCGGUCgACCGg -3'
miRNA:   3'- caUGUGCCGCGGG---------------GU-GGUCAGgUGGU- -5'
10704 3' -60.1 NC_002794.1 + 78705 0.68 0.696894
Target:  5'- -gACACGGCGCC--GCCAGaaacUgCACCAg -3'
miRNA:   3'- caUGUGCCGCGGggUGGUC----AgGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 10835 0.68 0.696894
Target:  5'- -gAgACGGCGCCCUGCUcGUCaCGCUc -3'
miRNA:   3'- caUgUGCCGCGGGGUGGuCAG-GUGGu -5'
10704 3' -60.1 NC_002794.1 + 93037 0.68 0.696894
Target:  5'- gGUGCGCGGCuGCCUgGCCu-UCCugCu -3'
miRNA:   3'- -CAUGUGCCG-CGGGgUGGucAGGugGu -5'
10704 3' -60.1 NC_002794.1 + 182058 0.68 0.696894
Target:  5'- cUGCGCguagGGCGCCUgCGuCCGGUCgGCCAc -3'
miRNA:   3'- cAUGUG----CCGCGGG-GU-GGUCAGgUGGU- -5'
10704 3' -60.1 NC_002794.1 + 183459 0.68 0.696894
Target:  5'- -cGC-CGGCGCccgCCCGCCgcgAGUCCGCg- -3'
miRNA:   3'- caUGuGCCGCG---GGGUGG---UCAGGUGgu -5'
10704 3' -60.1 NC_002794.1 + 154344 0.68 0.696894
Target:  5'- gGUGcCGCGGCcgaGCuCCCGCgCGGUCCagGCCGc -3'
miRNA:   3'- -CAU-GUGCCG---CG-GGGUG-GUCAGG--UGGU- -5'
10704 3' -60.1 NC_002794.1 + 180623 0.68 0.696894
Target:  5'- -gACACGGCGgCCCACCcGcgcUCCagacgacgaGCCAg -3'
miRNA:   3'- caUGUGCCGCgGGGUGGuC---AGG---------UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.