miRNA display CGI


Results 61 - 80 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10704 3' -60.1 NC_002794.1 + 27489 0.68 0.667674
Target:  5'- -cGCGCcGagGCCgCGCCAGUCCAUCAu -3'
miRNA:   3'- caUGUGcCg-CGGgGUGGUCAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 41201 0.68 0.667674
Target:  5'- cGU-CACGGCGCUgcugCCACCGG-CCuCCGg -3'
miRNA:   3'- -CAuGUGCCGCGG----GGUGGUCaGGuGGU- -5'
10704 3' -60.1 NC_002794.1 + 48060 0.68 0.65787
Target:  5'- -gGCACGGCGCugauggCCgGCCAGcgggagcagCCGCCGc -3'
miRNA:   3'- caUGUGCCGCG------GGgUGGUCa--------GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 124391 0.68 0.654925
Target:  5'- -cGCgGCGGCGCgUCGCCGgucgucggggcgccGUCCGCCGc -3'
miRNA:   3'- caUG-UGCCGCGgGGUGGU--------------CAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 152558 0.68 0.648047
Target:  5'- aGUGCcaggaGCGGCGCUUCACCGccgcGgcggCCGCCAc -3'
miRNA:   3'- -CAUG-----UGCCGCGGGGUGGU----Ca---GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 183920 0.68 0.687193
Target:  5'- -gACACGGU-CCCCGgCAGggucaCCGCCAc -3'
miRNA:   3'- caUGUGCCGcGGGGUgGUCa----GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 72452 0.68 0.687193
Target:  5'- ---gGCGGCGCCCCGcgcCCGG-CC-CCGc -3'
miRNA:   3'- caugUGCCGCGGGGU---GGUCaGGuGGU- -5'
10704 3' -60.1 NC_002794.1 + 184186 0.68 0.696894
Target:  5'- --cCGCGGCGCCCgGCgAGgcCCGCUc -3'
miRNA:   3'- cauGUGCCGCGGGgUGgUCa-GGUGGu -5'
10704 3' -60.1 NC_002794.1 + 154344 0.68 0.696894
Target:  5'- gGUGcCGCGGCcgaGCuCCCGCgCGGUCCagGCCGc -3'
miRNA:   3'- -CAU-GUGCCG---CG-GGGUG-GUCAGG--UGGU- -5'
10704 3' -60.1 NC_002794.1 + 183459 0.68 0.696894
Target:  5'- -cGC-CGGCGCccgCCCGCCgcgAGUCCGCg- -3'
miRNA:   3'- caUGuGCCGCG---GGGUGG---UCAGGUGgu -5'
10704 3' -60.1 NC_002794.1 + 182058 0.68 0.696894
Target:  5'- cUGCGCguagGGCGCCUgCGuCCGGUCgGCCAc -3'
miRNA:   3'- cAUGUG----CCGCGGG-GU-GGUCAGgUGGU- -5'
10704 3' -60.1 NC_002794.1 + 93037 0.68 0.696894
Target:  5'- gGUGCGCGGCuGCCUgGCCu-UCCugCu -3'
miRNA:   3'- -CAUGUGCCG-CGGGgUGGucAGGugGu -5'
10704 3' -60.1 NC_002794.1 + 10835 0.68 0.696894
Target:  5'- -gAgACGGCGCCCUGCUcGUCaCGCUc -3'
miRNA:   3'- caUgUGCCGCGGGGUGGuCAG-GUGGu -5'
10704 3' -60.1 NC_002794.1 + 78705 0.68 0.696894
Target:  5'- -gACACGGCGCC--GCCAGaaacUgCACCAg -3'
miRNA:   3'- caUGUGCCGCGGggUGGUC----AgGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 180623 0.68 0.696894
Target:  5'- -gACACGGCGgCCCACCcGcgcUCCagacgacgaGCCAg -3'
miRNA:   3'- caUGUGCCGCgGGGUGGuC---AGG---------UGGU- -5'
10704 3' -60.1 NC_002794.1 + 183994 0.68 0.696894
Target:  5'- ---nACcGCGCCcgCCACCGuGUCCACCAu -3'
miRNA:   3'- caugUGcCGCGG--GGUGGU-CAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 145536 0.68 0.687193
Target:  5'- -aGCGCcucgGGCGCCCCgagcggcccgACCGGUUCGCgGa -3'
miRNA:   3'- caUGUG----CCGCGGGG----------UGGUCAGGUGgU- -5'
10704 3' -60.1 NC_002794.1 + 83109 0.68 0.69205
Target:  5'- -gGCACGGauuaucugcucaaGCUCCGCCAGUacuucgaCCGCCu -3'
miRNA:   3'- caUGUGCCg------------CGGGGUGGUCA-------GGUGGu -5'
10704 3' -60.1 NC_002794.1 + 127228 0.68 0.687193
Target:  5'- -aGCA-GGCGCCCCGCUAcaCgGCCAc -3'
miRNA:   3'- caUGUgCCGCGGGGUGGUcaGgUGGU- -5'
10704 3' -60.1 NC_002794.1 + 69063 0.69 0.638213
Target:  5'- --cCACGG-GCCgCCGCCGG-CCGCCc -3'
miRNA:   3'- cauGUGCCgCGG-GGUGGUCaGGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.