miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10704 3' -60.1 NC_002794.1 + 68426 0.72 0.431347
Target:  5'- -gGCACGGUGgCCCACCAccgcugguUCCGCCu -3'
miRNA:   3'- caUGUGCCGCgGGGUGGUc-------AGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 80427 0.72 0.457542
Target:  5'- -cGgGCGGgGCCgCCGCCGGcggCCGCCGg -3'
miRNA:   3'- caUgUGCCgCGG-GGUGGUCa--GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 145419 0.72 0.466462
Target:  5'- -aGCGCGGCGCgCCGCC-GUCgGCUc -3'
miRNA:   3'- caUGUGCCGCGgGGUGGuCAGgUGGu -5'
10704 3' -60.1 NC_002794.1 + 194280 0.72 0.466462
Target:  5'- -cGCACGGCGCgCgCCAcguCCAGUCguCCAg -3'
miRNA:   3'- caUGUGCCGCG-G-GGU---GGUCAGguGGU- -5'
10704 3' -60.1 NC_002794.1 + 107147 0.71 0.493742
Target:  5'- -gACGuCGGCGCCCCcgGCgAGggCCGCCGc -3'
miRNA:   3'- caUGU-GCCGCGGGG--UGgUCa-GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 65381 0.71 0.493742
Target:  5'- -cACACGGCGCCCCcucacCCGGuuUCCGuCCc -3'
miRNA:   3'- caUGUGCCGCGGGGu----GGUC--AGGU-GGu -5'
10704 3' -60.1 NC_002794.1 + 8175 0.71 0.502997
Target:  5'- -gGCcCGGCGUCCCGcCCGGUuucCCACCc -3'
miRNA:   3'- caUGuGCCGCGGGGU-GGUCA---GGUGGu -5'
10704 3' -60.1 NC_002794.1 + 69026 0.7 0.559947
Target:  5'- -gACGcCGGCGCCCuCGCCGGcuuccucgcUCCGCUc -3'
miRNA:   3'- caUGU-GCCGCGGG-GUGGUC---------AGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 17650 0.7 0.579354
Target:  5'- --cCGCGGcCGCCgCCACCGccgCCACCGc -3'
miRNA:   3'- cauGUGCC-GCGG-GGUGGUca-GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 32657 0.7 0.56963
Target:  5'- -gGCgACGGCGCCguCC-CCGucGUCCGCCAa -3'
miRNA:   3'- caUG-UGCCGCGG--GGuGGU--CAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 75293 0.7 0.56963
Target:  5'- -gGC-CGGCGCCUCGCCAG-CCGaCAu -3'
miRNA:   3'- caUGuGCCGCGGGGUGGUCaGGUgGU- -5'
10704 3' -60.1 NC_002794.1 + 119769 0.7 0.57838
Target:  5'- gGU-CGCGGCcgGCCuCCAggcggcuCCGGUCCGCCGa -3'
miRNA:   3'- -CAuGUGCCG--CGG-GGU-------GGUCAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 83770 0.7 0.531196
Target:  5'- cGUACgacgACGaCGCCgCCGCCGcGUCCGCCGu -3'
miRNA:   3'- -CAUG----UGCcGCGG-GGUGGU-CAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 182753 0.7 0.55031
Target:  5'- -gACGCGGUacagguagcaGCCgCAcgcCCGGUCCACCAc -3'
miRNA:   3'- caUGUGCCG----------CGGgGU---GGUCAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 190456 0.7 0.55031
Target:  5'- cGUGCGCGGCGUcgcgcccgacgCCCACgGGUgCC-CCAc -3'
miRNA:   3'- -CAUGUGCCGCG-----------GGGUGgUCA-GGuGGU- -5'
10704 3' -60.1 NC_002794.1 + 69824 0.7 0.56963
Target:  5'- -gAC-CGGCGUCCgC-CCGGUCCGCUg -3'
miRNA:   3'- caUGuGCCGCGGG-GuGGUCAGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 183246 0.7 0.557051
Target:  5'- -cACGCGGCGgCCCGCCacucGGUacaguacagccagcCCACCGc -3'
miRNA:   3'- caUGUGCCGCgGGGUGG----UCA--------------GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 82884 0.7 0.56963
Target:  5'- cGUGCGCGccucgcgucCGCCUCGCC-GUCCGCCu -3'
miRNA:   3'- -CAUGUGCc--------GCGGGGUGGuCAGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 19533 0.7 0.531196
Target:  5'- -gGCGCGGCGCggCCCGCCGGUgUcggACCc -3'
miRNA:   3'- caUGUGCCGCG--GGGUGGUCAgG---UGGu -5'
10704 3' -60.1 NC_002794.1 + 189188 0.7 0.531196
Target:  5'- --cCGCGuGCGCCCC-CCAGaaCACCAc -3'
miRNA:   3'- cauGUGC-CGCGGGGuGGUCagGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.