miRNA display CGI


Results 81 - 100 of 143 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10704 3' -60.1 NC_002794.1 + 183920 0.68 0.687193
Target:  5'- -gACACGGU-CCCCGgCAGggucaCCGCCAc -3'
miRNA:   3'- caUGUGCCGcGGGGUgGUCa----GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 60881 0.68 0.676475
Target:  5'- aGUACAuCGGCGCcguggucCCCAucCCGuUCCGCCAc -3'
miRNA:   3'- -CAUGU-GCCGCG-------GGGU--GGUcAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 105661 0.68 0.667674
Target:  5'- --cCGCGGCGCgCuCCGCCcGGaCCGCCGg -3'
miRNA:   3'- cauGUGCCGCG-G-GGUGG-UCaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 56588 0.68 0.667674
Target:  5'- --cCGCGGCGCCcgCCGCCGG-CCuCCu -3'
miRNA:   3'- cauGUGCCGCGG--GGUGGUCaGGuGGu -5'
10704 3' -60.1 NC_002794.1 + 115058 0.68 0.667674
Target:  5'- -cGgGCGGCaGCgCCGuCCAGUCCACg- -3'
miRNA:   3'- caUgUGCCG-CGgGGU-GGUCAGGUGgu -5'
10704 3' -60.1 NC_002794.1 + 122661 0.68 0.667674
Target:  5'- cUGCugGCGGCGCaggCCCggcuguGCCGGUCgCGCCAg -3'
miRNA:   3'- cAUG--UGCCGCG---GGG------UGGUCAG-GUGGU- -5'
10704 3' -60.1 NC_002794.1 + 54999 0.68 0.667674
Target:  5'- ---gGCGGCGaCUCGCCGggcGUCCGCCGc -3'
miRNA:   3'- caugUGCCGCgGGGUGGU---CAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 23570 0.68 0.65787
Target:  5'- -gGCcCGGUGCCgCCGCCAc-CCGCCGa -3'
miRNA:   3'- caUGuGCCGCGG-GGUGGUcaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 27489 0.68 0.667674
Target:  5'- -cGCGCcGagGCCgCGCCAGUCCAUCAu -3'
miRNA:   3'- caUGUGcCg-CGGgGUGGUCAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 41201 0.68 0.667674
Target:  5'- cGU-CACGGCGCUgcugCCACCGG-CCuCCGg -3'
miRNA:   3'- -CAuGUGCCGCGG----GGUGGUCaGGuGGU- -5'
10704 3' -60.1 NC_002794.1 + 193939 0.67 0.725662
Target:  5'- -cGC-CGGCuccgGCCCCGCCg--CCACCGc -3'
miRNA:   3'- caUGuGCCG----CGGGGUGGucaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 93389 0.67 0.725662
Target:  5'- cUGCugGcCGCCUCGCCcaAGUUCGCCu -3'
miRNA:   3'- cAUGugCcGCGGGGUGG--UCAGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 42190 0.67 0.735114
Target:  5'- -cACGauCGGCcgaaacucGCCgCCGCCGGUCUGCCGc -3'
miRNA:   3'- caUGU--GCCG--------CGG-GGUGGUCAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 43043 0.67 0.735114
Target:  5'- -cGCGCGGCagGCCgaGCCGG-CCACCc -3'
miRNA:   3'- caUGUGCCG--CGGggUGGUCaGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 89980 0.67 0.725662
Target:  5'- gGUGCGcCGGCGUUCgACCGGUgCGCaCGa -3'
miRNA:   3'- -CAUGU-GCCGCGGGgUGGUCAgGUG-GU- -5'
10704 3' -60.1 NC_002794.1 + 90224 0.67 0.725662
Target:  5'- -nGCGcCGGaGCCCCGCCuguGGUCC-CCGc -3'
miRNA:   3'- caUGU-GCCgCGGGGUGG---UCAGGuGGU- -5'
10704 3' -60.1 NC_002794.1 + 143097 0.67 0.724713
Target:  5'- uUGCGCGGCguguuccaGCCCCGCUcggccguggcgcaGGUCUcggGCCAc -3'
miRNA:   3'- cAUGUGCCG--------CGGGGUGG-------------UCAGG---UGGU- -5'
10704 3' -60.1 NC_002794.1 + 116998 0.67 0.716137
Target:  5'- cGUcCGCGGCGUCUCGCCcaGGUaCCAgCCGc -3'
miRNA:   3'- -CAuGUGCCGCGGGGUGG--UCA-GGU-GGU- -5'
10704 3' -60.1 NC_002794.1 + 81549 0.67 0.716137
Target:  5'- cUGgACGGCuGCCgCCGCCGccgCCGCCGc -3'
miRNA:   3'- cAUgUGCCG-CGG-GGUGGUca-GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 37115 0.67 0.706545
Target:  5'- cGU-CACGGCGaagaCCCG-CAGcUCCGCCGg -3'
miRNA:   3'- -CAuGUGCCGCg---GGGUgGUC-AGGUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.